LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma10g01723	ATGCAAACTCCAATTGGGCCCTGGGACGACAACAAAGCTGGGTGGGTCGGAGGGTCCAATTTGGGTAGGGATTTTCCAACTCCGAAGGAAATCTTCAAGGGTCTCGACAAGTTTGTTATTGGCCAGCACATGGCCAAGAAGGCAGCAGAGTTCAATGTTCAAGCTGCTCAACAAGGGATTATTTACATTGATGAAGTGGACAAGATAACTAAGAAGGCTGAGAGCTTGAATATTAGCCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTATAGTAAATGTTCCTGAGAAAGGAGCGTGGAAGCATCCACGGGTGCAGTATGCATATGATTCTGGAATCATTTACTCATTGTTTTTCTTTTGCATTACTGTCCACTCATTTTTTTATGATATGCAGATTGACACAAAGAACATTCTTTTTATATGTGGTGGAGCATTTATTAATCTTGAGAAAACCATTTCAGAGAGACGACAAGATTCTTCAATTGGTTTTGGAGCACCTGTCCGTTCCAATATGAGAGCTGGTGGAATTACAAATGCTGCAGTCACATCATCTTTACTTGAGTCGGTCCTCATAGAACCAAAAAATGCTCTTGCTAAGCAGTACAAGAAATTATTTAACACGAATAATGTAAAGCTACACTTCACAGAGAAAGCTCATAGATTGATTGCAAAGAAGGCAATGGCCAAAAAAACTGGTGCGAGGGGTTTAAGAGCACTACTGGAAAGCATTTTAACCGAAGCTATGTATGAGATTCCAGATGTTAAAGCAGGAGATGAACTGATTGATGCAGTTGTTGTTGATGAGGAGTCAGTAGGATCAGTAAATGCCCCTGGTTGTGGAGGAAAAATTCTTTGTGGAGATGGTGCTTTGGAACTGTACCTGGCTAAGATTGAGGGTTCAGTGGTTAACGGGGACGTAGCTGAGCCAGACTTACAAGAAGGGGAATCAGAAATTTCATCAAGAGCCGTGAGCATGTAA	1005	0.4189	MQTPIGPWDDNKAGWVGGSNLGRDFPTPKEIFKGLDKFVIGQHMAKKAAEFNVQAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGAWKHPRVQYAYDSGIIYSLFFFCITVHSFFYDMQIDTKNILFICGGAFINLEKTISERRQDSSIGFGAPVRSNMRAGGITNAAVTSSLLESVLIEPKNALAKQYKKLFNTNNVKLHFTEKAHRLIAKKAMAKKTGARGLRALLESILTEAMYEIPDVKAGDELIDAVVVDEESVGSVNAPGCGGKILCGDGALELYLAKIEGSVVNGDVAEPDLQEGESEISSRAVSM	334

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma10g01723	334	Gene3D	-	47	170	IPR027417	-
	Gma10g01723	334	Pfam	AAA domain (Cdc48 subfamily)	46	166	IPR003959	GO:0005524\|GO:0016887
	Gma10g01723	334	PANTHER	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED	138	198	-	-
	Gma10g01723	334	PANTHER	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED	198	334	-	-
	Gma10g01723	334	PANTHER	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED	9	47	-	-
	Gma10g01723	334	PANTHER	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED	48	113	-	-
	Gma10g01723	334	Gene3D	-	190	289	-	-
	Gma10g01723	334	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	49	276	IPR027417	-
	Gma10g01723	334	SMART	ClpB_D2_small_2	190	280	IPR019489	-
	Gma10g01723	334	PANTHER	ATPASE, AAA-TYPE, CORE-RELATED	198	334	-	-
	Gma10g01723	334	PANTHER	ATPASE, AAA-TYPE, CORE-RELATED	138	198	-	-
	Gma10g01723	334	PANTHER	ATPASE, AAA-TYPE, CORE-RELATED	48	113	-	-
	Gma10g01723	334	PANTHER	ATPASE, AAA-TYPE, CORE-RELATED	9	47	-	-
	Gma10g01723	334	Pfam	C-terminal, D2-small domain, of ClpB protein	204	260	IPR019489	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma10g01723	Gma-Chr10	44412893	44417419	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma10g01723	K03544		-	gmx:100818418	436.032

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma10g01723	10	44412893	44417419	Gma10g01723	10	44412893	44417419	ECH
	Gma16g01680	16	37805587	37814024	Gma10g01723	10	44412893	44417419	PCT
	Gma09g01483	09	39558032	39567127	Gma10g01723	10	44412893	44417419	PCT
	Gma10g01723	10	44412893	44417419	Gma16g01680	16	37805587	37814024	PCT
	Gma10g01723	10	44412893	44417419	Gma09g01483	09	39558032	39567127	PCT