Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01483 ATGTCGCGAGTCTTCGGTAGATGGAAGAATGCGAAGGAAATGGCGTTGCTTTCGGGGTCCCTGCCACGTGGGCACCATCGAACCGGGTTCAATTTTTGCCCAATTTCGACCCACCTGAACATGATCGCCGGCCACCGGTGGCGGGAGGCTCCGGTGGGGGTTCAGGAGCGGTACAAGTGGGACCGCGGCGGGTCGGACGATACCTCGTCCCGGAAGATCCGGGCCGAGGCGAATTGCCCACGTTGCACCAAAGACATGAACCTTGTTTTCTCCAATCGCCACTTTCCCACCCCACAAATTGAATCTGAATTGGGTGGTGGAGAAAGAGAAAAGGGTTACCAATCGGTGAACCTTTGCCCAAGTTGCAAAACTGCTTATTACTTTCGCCCTTATGACACTACACCTTTGCAAGGTACCTTTGTGGAGATTGGTAGGGTCACTAGTACTAACAATAATGGTGTTAATAATGTAAGCGGTAAGGGGCCTTCTCCTAGGAGGATCACACATGGGAAGGGTGGTGGCAAAGAGGGTAGTAGTAGTAGTACTAATAAGGGGGAGGAATTTGGGGGCAAGAGTAATAGTAATGCAAGTAAATGGCTTGAAGTGTCATTGTGGGAGACTTTGATGGCTTACAATGGTGGTGCTGGTGGAGGTGATGGTAGTAATGGCGAGCCACCTGAGTCGTGGCCGCTGCCACCAGATGATGGTAGTAATGGGAATGGGAATGGGAATGGATTGGCTGTGCATACTCCTCCAGGCCCACCTTTTGCACCTGGGATTAATGTTATCCGGGCTACGGGGCCACGGAATGGCGGATCGGGTGGTGCAGGTGGGGGCAAGGGCGAGAAGACTGCCTGGGGAGGGTCTAATTTGGGGAAGGATTTTCCCTCGCCCAAGGAAATCTGTAAGGGTCTCGACAAGTTTGTTATTGGCCAACAGAGAGCCAAGAAGGTGCTCTCTGTAGCTGTTTATAACCACTATAAAAGAATATACCATGCCACTTTACAGAAAGGGTCAGCCGCAGATTCAGGAGCTTCAGAAGTATTAGATGATGACGATAATGTGGAACTAGAAAAGAGTAATGTTCTCTTGATGGGTCCAACAGGGTCAGGGAAGACATTACTTGCTAAAACACTAGCTCGATTTGTGAATGTGCCGTTTGTCATTGCTGATGCAACAACCTTAACACAGGCTGGTTATGTTGGAGAAGATGTCGAATCAATACTGTATAAACTACTTGTGGCAGCAGATTTCAATGTTGCAGCAGCTCAACAAGGAATAATTTACATTGATGAAGTTGACAAAATAACTAAGAAGGCCGAGAGCTTAAATATCAGTCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTGAAAATGCTGGAAGGAACTATAGTAAATGTTCCTGAGAAAGGAGCTAGGAAGAATCCACGGGGGGATAACATTCAGATGGACACAAAAAATATTCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAAAAAACCATTTCGGAGAGACGACAAGATTCTTCTATTGGTTTTGGAGCCCCAGTTCGTGCAAATATGAGAGCTGTTGGAATAACAGATTCTGCAGTAACATCATCTTTACTTGAGTCAGTGGAAAGCGCTGATCTTATTGCATATGGCCTCATACCAGAGTTTATTGGACGATTCCCCATTTTAGTCAGCTTGTCAGCTTTAACTGAAGACCAACTTACGATGGTCCTCACTGAACCAAAAAATGCTCTTGGCAAGCAGTACAAGAAATTATTTAGCATGAACAATGTTAAGTTACACTTCACAGAGAATGCTCTAAGGCTGATAGCAAAAAAAGCGATGGCCAAAAATACTGGTGCCAGGGGTTTAAGAGCCCTACTGGAAAGCATTTTAACCGAAGCCATGTTTGAGATTCCTGATATTAAGACAGGAAGTGACCGAGTTGATGCAGTTGTAATCGATGAAGAGTCAGTAGGATCACTAACTGCCCCTGGATGTGGAGGGAAAATTCTTCATGGAGATGGTGCTTTAAAGCAGTACCTCGCTAAGATGAAGGATTCAGCGGTGAATGTAGACGTAGGTGAATCAGATTTACAAGAGGGGGATTTGGAGCTTTCATCAAGAGCCATTAGCTTGTGA 2142 0.4617 MSRVFGRWKNAKEMALLSGSLPRGHHRTGFNFCPISTHLNMIAGHRWREAPVGVQERYKWDRGGSDDTSSRKIRAEANCPRCTKDMNLVFSNRHFPTPQIESELGGGEREKGYQSVNLCPSCKTAYYFRPYDTTPLQGTFVEIGRVTSTNNNGVNNVSGKGPSPRRITHGKGGGKEGSSSSTNKGEEFGGKSNSNASKWLEVSLWETLMAYNGGAGGGDGSNGEPPESWPLPPDDGSNGNGNGNGLAVHTPPGPPFAPGINVIRATGPRNGGSGGAGGGKGEKTAWGGSNLGKDFPSPKEICKGLDKFVIGQQRAKKVLSVAVYNHYKRIYHATLQKGSAADSGASEVLDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLVAADFNVAAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKNPRGDNIQMDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRAVGITDSAVTSSLLESVESADLIAYGLIPEFIGRFPILVSLSALTEDQLTMVLTEPKNALGKQYKKLFSMNNVKLHFTENALRLIAKKAMAKNTGARGLRALLESILTEAMFEIPDIKTGSDRVDAVVIDEESVGSLTAPGCGGKILHGDGALKQYLAKMKDSAVNVDVGESDLQEGDLELSSRAISL 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01483 713 Pfam AAA domain (Cdc48 subfamily) 358 562 IPR003959 GO:0005524|GO:0016887
Gma09g01483 713 Gene3D - 568 668 - -
Gma09g01483 713 MobiDBLite consensus disorder prediction 174 194 - -
Gma09g01483 713 MobiDBLite consensus disorder prediction 213 248 - -
Gma09g01483 713 CDD AAA 359 470 - -
Gma09g01483 713 Pfam C-terminal, D2-small domain, of ClpB protein 569 638 IPR019489 -
Gma09g01483 713 PANTHER OS01G0886600 PROTEIN 63 690 - -
Gma09g01483 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 294 653 IPR027417 -
Gma09g01483 713 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 292 660 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Gma09g01483 713 SMART AAA_5 358 554 IPR003593 -
Gma09g01483 713 Gene3D - 289 567 IPR027417 -
Gma09g01483 713 SMART ClpB_D2_small_2 569 659 IPR019489 -
Gma09g01483 713 MobiDBLite consensus disorder prediction 147 162 - -
Gma09g01483 713 MobiDBLite consensus disorder prediction 147 194 - -
Gma09g01483 713 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 63 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01483 Gma-Chr9 39558032 39567127 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01483 K03544 - gmx:100816191 1332.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01680 16 37805587 37814024 Gma09g01483 09 39558032 39567127 GST
Gma09g01483 09 39558032 39567127 Gma10g01723 10 44412893 44417419 PCT
Gma10g01723 10 44412893 44417419 Gma09g01483 09 39558032 39567127 PCT