Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01541 ATGAAGCCGTGTCCAAAACTCAGTAACTCCTGTGTTGTGGGGGTTATCTACACAGTTTTGTTATTGGGATTACAAGGAGTGAGGGTTGTTGAATGCAGAGTGGCCAATGGATTGGACTGTTTTGAGTACCCTGCTATCAGCTGCAGAAAACACAGTGCAGTTTTGACTGATTTTGGTGGTGTTGGTGATGGAAAAACATCTAACACAAAGGCCTTTCAATATGCAATTAGCAATCTCAGCCATTATGCATCTGATGGTGGAGCTCTCCTTGTTGTGCCACCAGGGAAATGGTTAACAGGAAGTTTCAATCTCACCAGCCATTTCACACTTTTTCTCCAAAAGGAAGCTACCATTCTTGGATCTCAGGATGAATCAGAGTGGCCCACACTTCCTGTGCTACCATCATATGGCAGAGGAAGGGATGCTCCTGATGGAAGGTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTAATAATCACTGGTTACAATGGGACAATTGATGGACAAGGGTGTTATTGGTGGGACAAGTTCCACAAGGGTGAATTGAAACTCACCAGGCCTTACATGATTGAGATTATGTTCTCTGATCACATCCAGATATCTAATCTCACTTTGATCAATTCTCCATCTTGGTTTGTCCATCCAATTTACACAAGTGACATTATAATTCAAGGGCTGACCATTCTTGCTCCAGTTGACTCTCCAAACACTGATGGAATAGATCCAGATTCTTGTTCCAACATTAGGATTGAAGATTGCTACATAGTCTCCGGTGATGATTGTGTAGCAATAAAAAGTGGTTGGGATGAGTATGGAATCAAATTTGGAATGCCAAGCCAACACATAATCATTAGAAGGCTTGAATGTGTATCCCCAGATAGTGCTATGATTGCTTTAGGCAGTGAAATGTCTGGTGGAATCCAAGATGTTAGAGCTGAAGACCTCACAGCCATCAACACTCAATCAGCAGTTAGAATCAAAACTGCAGTTGGCAGAGGAGCATATGTGAGAGACATATTTATCAAAGGAATGAACTTAAACACCATGAAGTATGTGTTTTGGATGACAGGTTCTTATAGCTCACACCCTGACAATGGCTTTGATCCAAAAACACTTCCCAACATTACTGGAATAAACTATAGAGATGTCATTGCAGAGAATGTCACATATTCAGCAAGACTTGAAGGAATTGCTAATGATCCTTTTACAGGAATCTGTATTTCTAATGTGACTATCCATAGTGGAAAAAAGAAATTGCAATGGAATTGCACTGACATTGAGGGGGTTACAAGCAATGTCTATCCTAAGCCTTGTGAGTTGCTGCCTTTGAAGCAAGAGAAAATTGAGTGTCCTTATCCAGATGACAAAGTTTCCATTGAAAGTGTGCAGCTGAAGACTTGTTCCTTTAAAAGTGTCTCATTCTTCTGA 1434 0.4079 MKPCPKLSNSCVVGVIYTVLLLGLQGVRVVECRVANGLDCFEYPAISCRKHSAVLTDFGGVGDGKTSNTKAFQYAISNLSHYASDGGALLVVPPGKWLTGSFNLTSHFTLFLQKEATILGSQDESEWPTLPVLPSYGRGRDAPDGRFSSLIFGTNLTDVIITGYNGTIDGQGCYWWDKFHKGELKLTRPYMIEIMFSDHIQISNLTLINSPSWFVHPIYTSDIIIQGLTILAPVDSPNTDGIDPDSCSNIRIEDCYIVSGDDCVAIKSGWDEYGIKFGMPSQHIIIRRLECVSPDSAMIALGSEMSGGIQDVRAEDLTAINTQSAVRIKTAVGRGAYVRDIFIKGMNLNTMKYVFWMTGSYSSHPDNGFDPKTLPNITGINYRDVIAENVTYSARLEGIANDPFTGICISNVTIHSGKKKLQWNCTDIEGVTSNVYPKPCELLPLKQEKIECPYPDDKVSIESVQLKTCSFKSVSFF 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01541 477 PANTHER PECTIN LYASE-RELATED 16 470 - -
Gma16g01541 477 Pfam Glycosyl hydrolases family 28 149 429 IPR000743 GO:0004650|GO:0005975
Gma16g01541 477 Gene3D - 25 438 IPR012334 -
Gma16g01541 477 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 16 470 - -
Gma16g01541 477 SUPERFAMILY Pectin lyase-like 47 472 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01541 Gma-Chr16 35762762 35765885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01541 10 472 Glycoside Hydrolase AT3G61490 64.693 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01541 - - gmx:100785005 979.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01541 16 35762762 35765885 Gma09g01259 09 34317863 34329189 GST
Gma16g01541 16 35762762 35765885 Gma10g02196 10 49520126 49530623 PCT
Gma10g02196 10 49520126 49530623 Gma16g01541 16 35762762 35765885 PCT