Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01259 ATGGAGATTGGTGGACTCGGGAAGACATCTCTAATCTTAACTGCATTCGCTGCAGGACAAGCTGCTACCTTTAAAATGTTTGAAGCGATTAAGAGGCAGCCTGATATTGATGCTTATGACACTGATGGTCGACTGCTAGATGATATTTCTGGAGATATAGAGCTTAAGAAGGTCTGCTTTAGTTATACTTCTAGACCTGATAAGCAAATACTCAATGGATTTTCAATTTCAATACCAAGTGGCACTACTGCAGCTTTGGTAGGGCAAAGTGGAAATGAAGAAATCGAAGCTGCAGCTGAACTTGCTAATGTTGCTAAGTTCATAGATAAATTTCTCCATGTTGTTGGGGTTATCTTCACAGTTTTGTTATTGGGATTACAAGGAGTTAGGGTTGTTGAATGCAGAGTAGCCAATGGATTGGACTGTTTTGAGTACCCTGCTATCAGCTGCAGAAAACACAGTGCAGTTTTGACTGATTTTGGTGGTGTTGGTGATGGAAAAACATCTAACACCAAAGCTTTTCAATATGCAATTAGCAATCTCAGCCATTATGCATCTGATGGTGGAGCTCTACTTGTTGTGCCACCAGGGAAATGGCTAACAGGAAGCTTCAATCTCACAAGCCACTTCACACTTTTTCTCCAAAAGGAAGCTACCATTCTTGGATCTCAGGATGAATCAGAGTGGCCCACCCTTCCTGTGCTACCATCATATGGCAGAGGAAGGGATGCTCCTGATGGAAGGTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTAGTAATCACTGGTTACAATGGAACAATTGATGGACAAGGGTCTTATTGGTGGGACAAGTTCCACAAGGGTGAATTGAAACTCACCAGGCCTTACATGATTGAGATTATGTTCTCTGATCACATCCAGATATCAAATCTCACTTTGATCGATTCTCCATCTTGGTTTGTCCATCCAATTTACAGCAGTGACATTATAATTCAAGGGTTGACCATTCTTGCCCCAGTTGACTCTCCCAACACTGATGGAATAAATCCAGATTCTTGTTCCAACACTAGGATTGAAGATTGCTACATTGTCTCCGGTGATGATTGTGTAGCAATAAAAAGTGGTTGGGATGAGTCTGGAATCAAATTTGGAATGCCAAGCCAACACATAATAATCAGAAGGCTTGAATGTGTGTCCCCAGATAGTGCCATGATTGCCTTAGGAAGTGAAATGTCTGGTGGAATCCGAGATGTTAGAGCTGAAGAACTCACAGCTCTCAACACTCAATCAGCAGTTAGAATCAAAACTGCAGTTGGTAGAGGAGCTTATGTGAGGGACATATTTGTCAAAGGAATGAACTTAAACACCATGAAGTATGTGTTTTGGATGACAGGTTCTTATGGCTCACACCCTAACACCGATTTTGATCCCAAAGCACTTCCCAACATTACAGGAATAAACTACAGAGATGTCATTGCAGATAATGTCACATATTCAGCAAGACTTGAAGGGATTGCTAATGATCCTTTTACGGGAATCTGTATTTCTAATGTGACTATCCATAGTGGAAAAAAGAAACCGCAATGGAATTGCACTGACATTGAGGGGGTTACAAGCAATGTCTATCCTAAGCCTTGTGAGTTGCTGCCTCTGAAAGAGAAAATTGAGTGTCCTTATCCAGATGACAAATTGCCCATTGAAAGTGTGCAGCTGAAGACTTGTTCCTTTAAAAGTGTCTCATTCTTCTGA 1737 0.4122 MEIGGLGKTSLILTAFAAGQAATFKMFEAIKRQPDIDAYDTDGRLLDDISGDIELKKVCFSYTSRPDKQILNGFSISIPSGTTAALVGQSGNEEIEAAAELANVAKFIDKFLHVVGVIFTVLLLGLQGVRVVECRVANGLDCFEYPAISCRKHSAVLTDFGGVGDGKTSNTKAFQYAISNLSHYASDGGALLVVPPGKWLTGSFNLTSHFTLFLQKEATILGSQDESEWPTLPVLPSYGRGRDAPDGRFSSLIFGTNLTDVVITGYNGTIDGQGSYWWDKFHKGELKLTRPYMIEIMFSDHIQISNLTLIDSPSWFVHPIYSSDIIIQGLTILAPVDSPNTDGINPDSCSNTRIEDCYIVSGDDCVAIKSGWDESGIKFGMPSQHIIIRRLECVSPDSAMIALGSEMSGGIRDVRAEELTALNTQSAVRIKTAVGRGAYVRDIFVKGMNLNTMKYVFWMTGSYGSHPNTDFDPKALPNITGINYRDVIADNVTYSARLEGIANDPFTGICISNVTIHSGKKKPQWNCTDIEGVTSNVYPKPCELLPLKEKIECPYPDDKLPIESVQLKTCSFKSVSFF 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01259 578 Pfam Glycosyl hydrolases family 28 250 531 IPR000743 GO:0004650|GO:0005975
Gma09g01259 578 Gene3D - 127 540 IPR012334 -
Gma09g01259 578 SUPERFAMILY Pectin lyase-like 149 556 IPR011050 -
Gma09g01259 578 Gene3D ABC transporter type 1, transmembrane domain 6 42 IPR036640 GO:0005524|GO:0016021
Gma09g01259 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 91 IPR027417 -
Gma09g01259 578 Pfam Pectate lyase superfamily protein 158 212 IPR024535 -
Gma09g01259 578 Gene3D - 43 91 IPR027417 -
Gma09g01259 578 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 119 571 - -
Gma09g01259 578 PANTHER PECTIN LYASE-RELATED 119 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01259 Gma-Chr9 34317863 34329189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01259 135 573 Glycoside Hydrolase AT3G61490 67.333 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01259 - - gmx:100812836 955.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01541 16 35762762 35765885 Gma09g01259 09 34317863 34329189 GST
Gma09g01259 09 34317863 34329189 Gma10g02196 10 49520126 49530623 PCT
Gma10g02196 10 49520126 49530623 Gma09g01259 09 34317863 34329189 PCT