Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02196 ATGTCTCAGACTATGAAGCTGTGTTCACAGGTCATTGGTGCGATCTCCTTAGTTCTTATATTGGGATCACTAAATGTGAAAGTAGTAGAATGCAAGGTAGGCAGAGGATTGAAAAACACTGAATATTATGCCATAAATTGCCGAAAGCATAGTGCAGTTTTGACAGATTTTGGTGGAGTTGGTGATGGCAAAACATCCAACACAAAGGCCTTTCAATCAGCAATAAGAAAACTCGGCCAATATGCATCTGATGGGGGTGCACAACTTATTGTGCCACCTGGAAAATGGCTAACAGGACCTTTTAATCTTACAAGCCATTTCACTCTTTTTCTCCACAAGGATGCTGTTATTCTTGCATCTCAGGATGAATCAGAATGGCCCCAACTTCCTGTATTACCTTCATATGGAAGAGGAAGAGATGCTCCCGGAGGAAGGTTTAGCAGTCTAATTTTTGGAACTCACCTCACAGATGTTGTAATAACTGGTCAAAATGGTACTATTGATGGGCAAGGATCTTATTGGTGGGACAAGTTCCACAAGAACCAATTGAATCTCACCAGGCCATACATGATTGAGATCATGTACTCTGATCAAATCCAAATATCAAATCTCACTTTGGTCAACTCCCCATCCTGGTTTGTCCATCCAATTTACAGCAGTAACATAACAATAAAAGGGCTTACCATTCTCGCACCAGTGGACTCTCCAAACACAGATGGAATTGACCCAGATTCATGTACAAACACTAGGATTGAAGACTGCTACATTGTTTCTGGTGATGATTGTGTGGCAGTAAAAAGTGGTTGGGATGAGTATGGAATTAAATTTGGAAAGCCAACTCAACACCTAGTCATTAGAAGGCTCACATGTATTTCCCCTGATAGTGCCATGATTGCTTTAGGGAGTGAAATGTCTGGTGGAATCCAAGATGTTAGAGTTGAAGATATCACTGCCATCAACACTCAATCAGCAGTTAGAATCAAAACAGCAGTTGGTAGAGGTGGATATGTTAAAGACATATTTGTCAAAGGAATGACCCTCAGCACCATGAAATATGTATTTTGGATGACTGGCTCTTATGGATCACACCCTGACCCTGCCTTTGATCCCAAAGCACTTCCTAATATTACTGGAATAAATTACAGAGATGTTGTTGCAACGAATGTCACATATTCTGCAAAACTTGAAGGAATTTCTAATGACCCTTTCACAGGAATCTGCATTTCTAATGTGAGTATCCAAGTGAGTGAACAAAAGAAGAAGCTTCAGTGGAATTGCACTGATGTTGCTGGAGTTACGAGCAATGTCACTCCTAACACTTGTCAATTGTTGCCAGAGAAAGGGAAATTCGATTGTCCTTTTCCCAATGACAAACTGTCCATTGAAAATGTTCAGTTGAAGACTTGTTCCCTTCAGAATGTCTTCTAG 1428 0.4055 MSQTMKLCSQVIGAISLVLILGSLNVKVVECKVGRGLKNTEYYAINCRKHSAVLTDFGGVGDGKTSNTKAFQSAIRKLGQYASDGGAQLIVPPGKWLTGPFNLTSHFTLFLHKDAVILASQDESEWPQLPVLPSYGRGRDAPGGRFSSLIFGTHLTDVVITGQNGTIDGQGSYWWDKFHKNQLNLTRPYMIEIMYSDQIQISNLTLVNSPSWFVHPIYSSNITIKGLTILAPVDSPNTDGIDPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIKFGKPTQHLVIRRLTCISPDSAMIALGSEMSGGIQDVRVEDITAINTQSAVRIKTAVGRGGYVKDIFVKGMTLSTMKYVFWMTGSYGSHPDPAFDPKALPNITGINYRDVVATNVTYSAKLEGISNDPFTGICISNVSIQVSEQKKKLQWNCTDVAGVTSNVTPNTCQLLPEKGKFDCPFPNDKLSIENVQLKTCSLQNVF 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02196 475 PANTHER PECTIN LYASE-RELATED 15 470 - -
Gma10g02196 475 Pfam Glycosyl hydrolases family 28 148 430 IPR000743 GO:0004650|GO:0005975
Gma10g02196 475 SUPERFAMILY Pectin lyase-like 47 445 IPR011050 -
Gma10g02196 475 Gene3D - 38 442 IPR012334 -
Gma10g02196 475 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 15 470 - -
Gma10g02196 475 SMART pbh1 376 410 IPR006626 -
Gma10g02196 475 SMART pbh1 219 245 IPR006626 -
Gma10g02196 475 SMART pbh1 308 329 IPR006626 -
Gma10g02196 475 SMART pbh1 246 267 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02196 Gma-Chr10 49520126 49530623 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02196 17 471 Glycoside Hydrolase AT3G48950 67.965 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02196 - - gmx:100795453 962.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02196 10 49520126 49530623 Gma10g02196 10 49520126 49530623 ECH
Gma16g01541 16 35762762 35765885 Gma10g02196 10 49520126 49530623 PCT
Gma09g01259 09 34317863 34329189 Gma10g02196 10 49520126 49530623 PCT
Gma10g02196 10 49520126 49530623 Gma16g01541 16 35762762 35765885 PCT
Gma10g02196 10 49520126 49530623 Gma09g01259 09 34317863 34329189 PCT