Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01514 ATGAAAACCCTTAACAAAGCCTCACTTATTTTATTCCCTCTCTTGTTCCTTTCCCTATTCAAGCATTCCCATGCTGCAGGAATCGCTATCTACTGGGGCCAAAACGGTGGAGAAGGCACCTTAGCAGAAGCTTGCAACACTAGAAACTACCAATATGTGAACATAGCCTTCTTGTCCACTTTTGGCAACGGCCAAACTCCACAACTCAACCTTGCAGGTCATTGTGACCCCAACAACAATGGCTGCACTGGGTTGAGCAGTGACATCAAAACTTGCCAAGACCTTGGCATCAAAGTGTTGCTCTCCCTTGGTGGTGGTGCTGGAAGCTACTCCCTCAGCTCAGCTGATGATGCCACTCAACTTGCAAACTACCTCTGGCAGAATTTCCTTGGAGGTCAAACCGGATCAGGGCCATTAGGTAATGTTATAttggatggcattgactttgacattgaatctggtgggagtgaccattatgatgacctagccagggcattaaatagcttcagctcacaaaggaaggtgtacttgtctgcagccccacagtgcataatccctgatgctcacttggatagagccatccaaactgggctttttgactatgtgtgggttcaattctacaacaacccttcatgccaatactccagtggaaacaccaacaatttgatcaattcatggaaccaatggatcacagtgccagcttctcaaatcttcatggggcttcctgcatctgaggcagctgctccaagtggtggctttgtgcccgctgatgtgttgacttctcaggttcttcctgtgattaaacagtcttcaaagtatggtggagtcatgctctggaacagattcaatgatgtccaaaatggttatagtaatgctattaTTGGAAGTGTTTAA 894 0.2315 MKTLNKASLILFPLLFLSLFKHSHAAGIAIYWGQNGGEGTLAEACNTRNYQYVNIAFLSTFGNGQTPQLNLAGHCDPNNNGCTGLSSDIKTCQDLGIKVLLSLGGGAGSYSLSSADDATQLANYLWQNFLGGQTGSGPLGNVILDGIDFDIESGGSDHYDDLARALNSFSSQRKVYLSAAPQCIIPDAHLDRAIQTGLFDYVWVQFYNNPSCQYSSGNTNNLINSWNQWITVPASQIFMGLPASEAAAPSGGFVPADVLTSQVLPVIKQSSKYGGVMLWNRFNDVQNGYSNAIIGSV 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01514 297 Gene3D Glycosidases 26 296 - -
Gma16g01514 297 CDD GH18_hevamine_XipI_class_III 26 295 IPR045321 -
Gma16g01514 297 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
Gma16g01514 297 Pfam Glycosyl hydrolases family 18 28 284 IPR001223 GO:0005975
Gma16g01514 297 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 297 IPR001223 GO:0005975
Gma16g01514 297 PANTHER ENDOCHITINASE 13 297 - -
Gma16g01514 297 SUPERFAMILY (Trans)glycosidases 24 292 IPR017853 -
Gma16g01514 297 PANTHER ACIDIC ENDOCHITINASE 13 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01514 Gma-Chr16 35012437 35013937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01514 3 297 Glycoside Hydrolase AT5G24090 58.194 8.05e-124 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01514 K01183 - gmx:100815291 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01514 16 35012437 35013937 Gma16g01514 16 35012437 35013937 ECH
Gma16g01514 16 35012437 35013937 Gma09g01191 09 32561614 32563371 GST
Gma16g01514 16 35012437 35013937 Gma10g02170 10 49246658 49247977 PCT
Gma10g02170 10 49246658 49247977 Gma16g01514 16 35012437 35013937 PCT