Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02170 ATGGCCAAAAGCAAAAACTGTCATGCTTTGCCTCTTCTCCTTGCCCTGATCCTCTTCTTCACTCTTCTTGGAACCTCTCACGCAGGTGGCATAGCCATCTACTGGGGGCAAAATGGTAACGAGGGCACCCTCTCAGAAGCATGTGCAACAGGCAAATACACCCACATAAACATAGCCTTTCTCAACAAATTCGGCAATGGCCAAACCCCAGAAATGAACCTGGCTGGTCACTGCAACCCCGCAACCAATTCCTGCACAAAGTTCAGCTCCGAAATCAAGGACTGCCAAAGCAAAGGGATCAAGGTGTTACTTTCAATAGGTGGTGGCATTGGAAGCTACACTTTGGCTTCAGTAGAAGATGCAAGAAACGTTTCAACTTTTCTGTGGAACACTTTCTTGGGAGGCAAGTCATCATCATCTTCAAGGCCACTAGGTGATGCTGTGTTGGATGGCATAGACTTTGACATTGAACTTGGTTCAACACAAAACTATGAGCACCTTGCACGTTTTCTTAAGGCGTATAGTGGGGTTGGCGGGAAGAGGGTGTACCTAGGTGCTGCTCCTCAGTGTCCAATTCCTGATAGATTTTTGGGCACTGCCCTTAACACTGGCCTTTTTGACTTTGTTTGGGTTCAGTTCTACAATAACCCTCCGTGTCAGTATGCTAATGGGAACATAACTAACCTTGTGAGTTCTTGGAACCGGTGGACTAGTACGGTGCCTGCCGGGAAGATATTTTTAGGGTTGCCGGCCGATCCGGCCGCTGCTGGCAGCGGTTTCATTCCGGCTGACACGTTGACTTCTGAGATCCTGCCTGTGATTAAGGAGTCGCCAAAATATGGTGGGGTGATGCTGTGGTCAAGATTCTTTGATGTCCAGAACGGGTATAGTACTTCAATTATTGGCAGCGTGTGA 915 0.4809 MAKSKNCHALPLLLALILFFTLLGTSHAGGIAIYWGQNGNEGTLSEACATGKYTHINIAFLNKFGNGQTPEMNLAGHCNPATNSCTKFSSEIKDCQSKGIKVLLSIGGGIGSYTLASVEDARNVSTFLWNTFLGGKSSSSSRPLGDAVLDGIDFDIELGSTQNYEHLARFLKAYSGVGGKRVYLGAAPQCPIPDRFLGTALNTGLFDFVWVQFYNNPPCQYANGNITNLVSSWNRWTSTVPAGKIFLGLPADPAAAGSGFIPADTLTSEILPVIKESPKYGGVMLWSRFFDVQNGYSTSIIGSV 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02170 304 PANTHER ENDOCHITINASE 8 304 - -
Gma10g02170 304 PANTHER ACIDIC ENDOCHITINASE 8 304 - -
Gma10g02170 304 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 29 304 IPR001223 GO:0005975
Gma10g02170 304 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 149 157 IPR001579 GO:0004553|GO:0005975
Gma10g02170 304 SUPERFAMILY (Trans)glycosidases 26 300 IPR017853 -
Gma10g02170 304 CDD GH18_hevamine_XipI_class_III 29 302 IPR045321 -
Gma10g02170 304 Pfam Glycosyl hydrolases family 18 31 289 IPR001223 GO:0005975
Gma10g02170 304 Gene3D Glycosidases 29 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02170 Gma-Chr10 49246658 49247977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02170 8 304 Glycoside Hydrolase AT5G24090 63.300 2.48e-144 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02170 K01183 - gmx:100818728 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02170 10 49246658 49247977 Gma10g02170 10 49246658 49247977 ECH
Gma16g01514 16 35012437 35013937 Gma10g02170 10 49246658 49247977 PCT
Gma09g01191 09 32561614 32563371 Gma10g02170 10 49246658 49247977 PCT
Gma10g02170 10 49246658 49247977 Gma16g01514 16 35012437 35013937 PCT
Gma10g02170 10 49246658 49247977 Gma09g01191 09 32561614 32563371 PCT