Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01161 ATGGCATCGACTAAGAAGATCACCCTGAAGAGTTCGGACGGTGAGGCCTTCGAGGTGGAGGAGGCGGTGGCGCTGGAGTCGCAGACGATCAAGCACATGATCGAGGACGACTGCGCCGACAGTGGAATCCCTCTCCCCAATGTCACCAGCAAGATTCTGGCGAAGGTTATCGAGTACTGCAAGAAGCACGTTGAGGCGAACAGTGCTGATGAGAAGCCCAGTGAGGATGTGCTCAAGGCTTGGGACGTGGATTTCGTCAACGTTGATCAGGCCACTCTCTTCGATCTCATTCTGGCTGCAAACTACTTGAACATCAAGAGCCTTTTGGACCTTACTTGCCAGACAGTAGCAGACATGATCAAGGGAAAGACTCCTGAGGAAATTCGCAAGACATTCAACATCAAGAATGACTTCACCCCTGAGGAAGAGGAGGAAGTTCGTAGGGAAAACCAATGGGCGTTTGAATAA 468 0.5128 MASTKKITLKSSDGEAFEVEEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYCKKHVEANSADEKPSEDVLKAWDVDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01161 155 SMART skp1_3 4 105 IPR001232 GO:0006511
Gma16g01161 155 SUPERFAMILY Skp1 dimerisation domain-like 78 153 IPR036296 GO:0006511
Gma16g01161 155 CDD BTB_POZ_SKP1 6 120 - -
Gma16g01161 155 Pfam Skp1 family, tetramerisation domain 5 64 IPR016073 GO:0006511
Gma16g01161 155 Gene3D Potassium Channel Kv1.1; Chain A 1 155 IPR011333 -
Gma16g01161 155 Pfam Skp1 family, dimerisation domain 106 153 IPR016072 GO:0006511
Gma16g01161 155 PIRSF SCF_Skp 1 155 IPR016897 GO:0006511
Gma16g01161 155 PANTHER SKP1 1 155 IPR016897 GO:0006511
Gma16g01161 155 SUPERFAMILY POZ domain 5 65 IPR011333 -
Gma16g01161 155 PANTHER PUTATIVE-RELATED 1 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01161 Gma-Chr16 28844160 28845799 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01161 K03094 - gmx:100306458 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01161 16 28844160 28845799 Gma16g01161 16 28844160 28845799 ECH
Gma16g01161 16 28844160 28845799 Gma02g00416 02 4245030 4246593 GST
Gma11g00723 11 6083279 6084752 Gma16g01161 16 28844160 28845799 PCT
Gma16g01161 16 28844160 28845799 Gma11g00723 11 6083279 6084752 PCT