Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01157 ATGGCTATGAGTGGTGCCTCTCCCAATCATTCCCCCAAGCCCGGCTTCTCCTCGCCATGGAGCCAGATTGTCGCCGCCGCCGCACCTCCCTCCTCCTCCCCGCCGCCGGAAGACTCTGACAACGGCGGCGGAAGCAATGCCGATACCGGTAAGAGGGCTGCGTGGATTAAACCCTCGACTGCCGCTTCTTCTTCCGTCATGGGCGCCGATTCCTGGCCGCTGCCGTCGGAGTCCGCTCGCGCTCCGGCTAAATCGCCGTCTCCCTCGCTGTCGCCGTCTGAATTGGTGAAGGCTTCCACGGACACGTCCTCCGTGCCACCACCATTGCAGGGTCCTGGAAGCCTGACTCCCTCACCACATAGGAATGTTAGGGATAATGCTAACGCGAACAACAACAACAACACTGGGCAGACTCACCCGAAGTCTTTTAAACGCAGCAATTCGAACACCTATTCAAATGGAGGGTATCATCCACCACATATGTCTGGGCCTCAAGGTCCAATTGCTCCTGCTGGGTCCCACAACTACAATTCGGCTCTTAAGGAGCATCAACCCAGAGCTGGATTTTTGCCTAATGATCACCCACCGCATCGAAATTCTTTTAGGCACCGGAATGGTGGTGGTCCACATCAGCGTGGAGATGGTCACCACCATCATAATAACTATGGGGGAAGGCGTGATCAGGACCCTGGAAATCAGGACTGGAATAATCACCGGAATTTTAATGGTAGAGACAACTTTATGTCCCCGAGATTTGGTCCGAGGTTTATAAGGCCTCCACCGCCTCCTAATCCTGCTCAATTGTTTCCACCACCACCTCCACTGCGCCCTTATGGGGGCTCTATTGGGTTTACTGAACTACCTCCACAGATGGTATATGTTCCGCCTCCGCCTCTGGAATCAATGAGAGGTGTTCCTTTTGTGTCTCCAATACCTCCTAATGCAATGTTTTTCCAACCTCTGGATAATCAGTTGCATACTAAGATTGTCAACCAGATTGACTACTATTTCAGCAATGAAAATTTAGTTAAAGATACATACTTGCGGCGGAACATGGATGACCAGGGCTGGGTTCCTATAAATTTAATAGCAGGCTTCAAGAAAGTCAAGTATTTGACTGAAAATATCCAGATTGTGTTAGATGCTGTTCGAACTTCATCTGTTGTTGAAGTTCAGGGTGACAAAATAAGGAGAAGAAATGATTGGAGGAGATGGATCTTGCCTGCTGGTCTGGTTCCTAATGTTAGAGGTTCTCAAACTGTTGGACAGCTGGCAGAACAAGTCCAAAACATTGCTCTGGAGACAACTATCAATGACAATGCTGGAATATTAGATGATTCACAGAATAGAACTTTTGGGGATTCGAATAGTCAATATCTCATTTCCACTAGCGAGGGTACTGCTCAAGTTGGTATTCAAGTTTCAGACCATTCTGTTTCTGCAAGAAATTAG 1452 0.4897 MAMSGASPNHSPKPGFSSPWSQIVAAAAPPSSSPPPEDSDNGGGSNADTGKRAAWIKPSTAASSSVMGADSWPLPSESARAPAKSPSPSLSPSELVKASTDTSSVPPPLQGPGSLTPSPHRNVRDNANANNNNNTGQTHPKSFKRSNSNTYSNGGYHPPHMSGPQGPIAPAGSHNYNSALKEHQPRAGFLPNDHPPHRNSFRHRNGGGPHQRGDGHHHHNNYGGRRDQDPGNQDWNNHRNFNGRDNFMSPRFGPRFIRPPPPPNPAQLFPPPPPLRPYGGSIGFTELPPQMVYVPPPPLESMRGVPFVSPIPPNAMFFQPLDNQLHTKIVNQIDYYFSNENLVKDTYLRRNMDDQGWVPINLIAGFKKVKYLTENIQIVLDAVRTSSVVEVQGDKIRRRNDWRRWILPAGLVPNVRGSQTVGQLAEQVQNIALETTINDNAGILDDSQNRTFGDSNSQYLISTSEGTAQVGIQVSDHSVSARN 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01157 483 Pfam La domain 329 384 IPR006630 -
Gma16g01157 483 SUPERFAMILY "Winged helix" DNA-binding domain 317 408 IPR036390 -
Gma16g01157 483 MobiDBLite consensus disorder prediction 82 156 - -
Gma16g01157 483 PANTHER LUPUS LA PROTEIN-RELATED 23 476 IPR045180 -
Gma16g01157 483 PANTHER ATP SYNTHASE, A SUBUNIT 23 476 - -
Gma16g01157 483 MobiDBLite consensus disorder prediction 1 245 - -
Gma16g01157 483 MobiDBLite consensus disorder prediction 207 225 - -
Gma16g01157 483 Gene3D - 319 405 IPR036388 -
Gma16g01157 483 ProSiteProfiles La-type HTH domain profile. 319 408 IPR006630 -
Gma16g01157 483 MobiDBLite consensus disorder prediction 1 28 - -
Gma16g01157 483 CDD LAM 328 398 - -
Gma16g01157 483 SMART la 323 399 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01157 Gma-Chr16 28774791 28778429 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01157 K18757 - gmx:100794531 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01157 16 28774791 28778429 Gma16g01157 16 28774791 28778429 ECH
Gma16g01157 16 28774791 28778429 Gma02g00413 02 4222830 4226991 GST
Gma11g00729 11 6113585 6118051 Gma16g01157 16 28774791 28778429 PCT
Gma16g01157 16 28774791 28778429 Gma11g00729 11 6113585 6118051 PCT