Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00317 ATGTCTTCTCCAAGCAAGCGGCGAGAAATGGACTTGATGAAACTGATGATGAGTGACTACAAGGTGGAGATGATTAATGATGGAATGCAAGAGTTTTATGTGCACTTCCATGGACCCAATGAGAGTCCTTATCATGGAGGTGTATGGAAAGTAAGAGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCAATCCATCAGACCCCTTGAACGGAGAAGCTGCAGCTTTAATGATGCGTGATCGAGCCACTTATGAACAAAGGGTTAAAGAGTACTGTGAGAAGTATGCTAAACCTGAAGACATAGGAGCTGCCACAGAAGAGAACTCCAGTGATGAAGAGCTAAGTGAAGATGAATATGATTCTAGTGATGAACAGGTTGCTGGTAAGGCAGACCCCTAG 552 0.4221 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPNESPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRATYEQRVKEYCEKYAKPEDIGAATEENSSDEELSEDEYDSSDEQVAGKADP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00317 183 MobiDBLite consensus disorder prediction 150 183 - -
Gma16g00317 183 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Gma16g00317 183 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
Gma16g00317 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 183 - -
Gma16g00317 183 SMART ubc_7 4 148 - -
Gma16g00317 183 MobiDBLite consensus disorder prediction 156 172 - -
Gma16g00317 183 CDD UBCc 7 143 IPR000608 -
Gma16g00317 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Gma16g00317 183 SUPERFAMILY UBC-like 4 148 IPR016135 -
Gma16g00317 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Gma16g00317 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00317 Gma-Chr16 3338630 3341630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00317 3 150 Miscellaneous Gene Families AT3G17000 23.418 1.13e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00317 K10576 - gmx:548025 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00317 16 3338630 3341630 Gma16g00317 16 3338630 3341630 ECH
Gma07g00635 07 6526719 6529223 Gma16g00317 16 3338630 3341630 GST
Gma18g02164 18 55351852 55354735 Gma16g00317 16 3338630 3341630 PCT
Gma09g02359 09 48964006 48967687 Gma16g00317 16 3338630 3341630 PCT
Gma16g00317 16 3338630 3341630 Gma18g02164 18 55351852 55354735 PCT
Gma16g00317 16 3338630 3341630 Gma09g02359 09 48964006 48967687 PCT