Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02359 ATGTCTTCCCCAAGCAAGCGCCGAGAGATGGACTTGATGAAACTGATGATGAGTGATTACAAGGTCGAGATGATTAATGATGGAATGCAAGAATTTTATGTGCAATTCCATGGACCCAATGACAGTCCTTATCATGGTGGTGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCGATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAATCCATCAGACCCCTTGAATGGAGAAGCTGCCGCTTTAATGATGCGTGACCGACCAAGTTACGAACAAAGGGTTAAAGAGTACTGTGAGAAGTATGCTAAACCCGAAGACATAGGGGAAGCCACAGAAGAGAAATCCAGTGATGAGGAGATGAGTGAAGATGAATATGATTCTAGTGATGAACAGGTTGTTGGTAAAGCAGACCCCTAG 552 0.4312 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRPSYEQRVKEYCEKYAKPEDIGEATEEKSSDEEMSEDEYDSSDEQVVGKADP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02359 183 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Gma09g02359 183 MobiDBLite consensus disorder prediction 146 183 - -
Gma09g02359 183 SMART ubc_7 4 148 - -
Gma09g02359 183 MobiDBLite consensus disorder prediction 156 172 - -
Gma09g02359 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA 3 183 - -
Gma09g02359 183 CDD UBCc 7 143 IPR000608 -
Gma09g02359 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Gma09g02359 183 Gene3D Ubiquitin Conjugating Enzyme 1 162 IPR016135 -
Gma09g02359 183 SUPERFAMILY UBC-like 4 148 IPR016135 -
Gma09g02359 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 183 - -
Gma09g02359 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02359 Gma-Chr9 48964006 48967687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02359 3 150 Miscellaneous Gene Families AT3G17000 24.845 7.10e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02359 K10576 - gmx:100805356 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g02359 09 48964006 48967687 Gma09g02359 09 48964006 48967687 ECH
Gma18g02164 18 55351852 55354735 Gma09g02359 09 48964006 48967687 GST
Gma09g02359 09 48964006 48967687 Gma07g00635 07 6526719 6529223 PCT
Gma09g02359 09 48964006 48967687 Gma16g00317 16 3338630 3341630 PCT
Gma07g00635 07 6526719 6529223 Gma09g02359 09 48964006 48967687 PCT
Gma16g00317 16 3338630 3341630 Gma09g02359 09 48964006 48967687 PCT