Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00194 ATGAACCCAGAAATGAATGGGGTTGAGGCTGAGAAGAGGCAAGAGAATGGACATGAGAAAGTGGATTATGATGTGCAAGAGAAAATAGACTATGTTTTTAAGGTGGTGGTGATAGGGGACTCAGCAGTTGGAAAGACTCAAATACTCTCAAGGTTTGCAAAGAATGAGTTCTGCTTTGACTCAAAGTCCACCATTGGGGTTGAATTCCAGACTAGGACTGTCACTATTAATGCCAAAGTCATCAAAGCTCAGATCTGGGACACTGCTGGCCAGGAAAGGGCTGTAACAAGTGCATACTACAGAGGTGCATTAGGGGCAATGCTTGTCTACGACATAACGAAGAGGCAATCGTTTGATCATGTAGCGAGATGGGTGGAGGAGCTGCGTGCGCACGCAGATAGCTCCATTGTGATCATGTTGGTTGGGAACAAAGCTGATCTTGTGGACCAGAGAATGGTACCAACTGAGGATGCAGTGGAGTTTGCTGAGGACCAAGGCCTCTTCTTCTCCGAGACTTCAGCTCTCAGTGGTGACAATGTGGAGAGTGCATTTCTCAAATTGCTAGAAGAGATCAATAGGGTAGTGTCCAAAAAGGCTTTGGAATGTGGTTTAGGGAAGGAGAATGGTGACACCAATGTTGCCTCACTCAAAGGAACAAAGGTTGATATAATCTTAGGTCCTGAATTGGAAATTAGTGAGATGAAGAAATTGTCTTCGTGCTCTTGTTAA 729 0.4486 MNPEMNGVEAEKRQENGHEKVDYDVQEKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFDSKSTIGVEFQTRTVTINAKVIKAQIWDTAGQERAVTSAYYRGALGAMLVYDITKRQSFDHVARWVEELRAHADSSIVIMLVGNKADLVDQRMVPTEDAVEFAEDQGLFFSETSALSGDNVESAFLKLLEEINRVVSKKALECGLGKENGDTNVASLKGTKVDIILGPELEISEMKKLSSCSC 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00194 242 ProSiteProfiles small GTPase Ras family profile. 27 225 IPR001806 GO:0003924|GO:0005525
Gma16g00194 242 ProSiteProfiles small GTPase Rho family profile. 26 195 - -
Gma16g00194 242 Gene3D - 25 220 IPR027417 -
Gma16g00194 242 PRINTS Transforming protein P21 ras signature 33 54 - -
Gma16g00194 242 PRINTS Transforming protein P21 ras signature 56 72 - -
Gma16g00194 242 PRINTS Transforming protein P21 ras signature 74 96 - -
Gma16g00194 242 PRINTS Transforming protein P21 ras signature 134 147 - -
Gma16g00194 242 PRINTS Transforming protein P21 ras signature 169 191 - -
Gma16g00194 242 ProSiteProfiles small GTPase Rab1 family profile. 28 232 - -
Gma16g00194 242 SMART rab_sub_5 33 194 - -
Gma16g00194 242 SMART ran_sub_2 38 234 - -
Gma16g00194 242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 194 IPR027417 -
Gma16g00194 242 SMART ras_sub_4 30 194 - -
Gma16g00194 242 PANTHER RAS-RELATED PROTEIN RABA3 1 242 - -
Gma16g00194 242 Pfam Ras family 34 192 IPR001806 GO:0003924|GO:0005525
Gma16g00194 242 CDD Rab11_like 30 191 - -
Gma16g00194 242 TIGRFAM small_GTP: small GTP-binding protein domain 32 184 IPR005225 GO:0005525
Gma16g00194 242 PANTHER - 1 242 - -
Gma16g00194 242 SMART rho_sub_3 35 197 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00194 Gma-Chr16 2070191 2071751 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00194 K07904 - gmx:121173763 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00194 16 2070191 2071751 Gma16g00194 16 2070191 2071751 ECH
Gma07g00497 07 4694050 4695554 Gma16g00194 16 2070191 2071751 GST
Gma19g02431 19 52780926 52782750 Gma16g00194 16 2070191 2071751 PCT
Gma03g02385 03 48959450 48961532 Gma16g00194 16 2070191 2071751 PCT
Gma16g00194 16 2070191 2071751 Gma19g02431 19 52780926 52782750 PCT
Gma16g00194 16 2070191 2071751 Gma03g02385 03 48959450 48961532 PCT