Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00586 ATGGGTTATGAGTATATTTTGGGAGGCATTATAGCTTCTAGCTTGGTGCTTGTGTTTGTTATATATGGTTCTGTATCAAAGAGGAAGGCCAAAAGTTCAGTACATGCAGAAAGTAATGGTGGTAGTATTATAAGGACATCACCAGAAAATGGAAACCACCATCAAGAAATCTCAGAAACTACGGACGTCATCATTGTCGGTGCTGGGGTTGCTGGCGCAGCCCTTGCTTACACACTTGGCAAGGAAGGAAGGCGAGTGCATGTTATTGAAAGGGACTTGACTGAACCAGACAGGATTGTGGGGGAATTGCTACAACCTGGGGGGTATCTTAAGTTAATTGAATTGGGTCTCCAAGATTGTGTGGGTGAGATTGATGCTCAGCCAGTCTTTGGCTATGCTCTTTACAAGGACGGGAAAAATACTAAGCTTTCTTACCCCTTGGAAAATTTTGCCTCTGATGTTTCTGGAAGAAGCTTTCACAATGGCCGTTTCATACAAAGGATGCGCGAAAAGGCTTCATCTCTTCCAAAtgtaaaattagaacaaggaactgtcacatttctactagaagaagatagaatcatcaaaggggtaaacttcaaaaccaagagtggacaagagctcacagctaaggctcccctcaccattgtatgtgatggctgtttttccaacctgagacgttctctttgcaacccaaaggttgatgtaccatctcattttgttggtctggtcctagagaactgcaatcttccatatgcaaaccacgggcacgttatcttgggtgatccttctcccattttgttttatcccatcagtagcactgagattcggtgtttggttgatgtgcctggccataaattaccttcccttggcaatggtgacatggcccgttatttgaaaacagtagtagctccccaggttcctccagagctgcgtgactcttttatagcagcagttgagaaaggaaacataagaagcatgccaaacagaagcatgcccgcatctccttatcccacacctggtgcccttctcatgggagatgccttcaacatgcgtcaccctttaaccggagggggaatgactgtggctttgtctgacattgttttgctaaggaaccttcttagacccctgcatgatctgcatgacgctaatgctctttgcaaatatcttgaatcattctacaccctacgcaagccagtggcatctacaataaacacattagctggggcattgtacaaggtgttttgtgcatcccctgatccagctagtaaggaaatgcgccaggcatgttttgattatttaagccttggaggtgttttctcagatggaccaattgctctactctctggtctaaatcctcgtccattaagcttggttctccacttctttgccgtggctatatatggtgttggtcgcttactcataccattcccttctccaaaacgaatgtggattggagctagattgatttccggtgcctctgctatcattttccccattatcaaggccgaaggaattagacaaatGGATAGGATCCGTTGCCGAGACCTCCagccaaaagaaaattcgaccacctctctctctctctctctctctctGACAGGGATCGCGACGAGCGGCGCCACCGTCACTGATCGAAGAGAAACTTCGACATCGGAACCTGCCGCAGCCACCTCCACCACCACCGCGCACTTCAACTCTCTTTCAGCAAAAAAAATTGTCACTCAAATGGATTTGGAGACGGAAAACAGATTAGCTGCTATGCTTATGAGGGAAGCAGCAGAATTACGGCGGCAGTCTGAAAGGGAAGGAGTTCTGGCTTATCTTCGCAAGCCTAATATACGGACCCGACCAAATTCACGTTTCCTCACTGCAACTGTTCGTGGAGTACAACAAGCAAATCGAGCTGTGGAAGTGAATGAGATGTGGCGATTGAGGCAAAAAGAGCTCGAGCTGGATAAACGTGTTAAAGAAAAATCCTTGGGTAAAAGCAGTAGAGATAGAAGCCATGGGGATGATAACTCATCAAGAGGCACAGGAAGACATGCTAGTATTGATAATAGCACTTCAACCTCCTCCTCTTCAAGGTCAGGTAAAAGAGAGTATGAGTTGGATAAATGGGTTAAAGACACATCAAAAGATAAAAGCAGCGGTGACAGGAGCTATAGGGCTGGAAACTCATCAAGAAGCGCCGGAAGACATGCTGCAGTGGATAAAAGCACTAGTGCACATGCTTCATGCTCCAGTGAAAGAGAATATGAGCATGGTCTGGAAGGTTTAAAGGATGAAGAGCTTGAGGAGTTTCTACACTCAAGGACCAAGCGAGGCAGAGGTGCTGTTGGTCCAAGGATGGATGAGACTGGACCTTACCTTCCTCATTTGGAAGGGGAGCCTAGTACTAGTCCCGATGTAAGGGAGCATCGTGTTATTTATGGTCCAGAGAAGCCTCTGTCATTGAGGCCATATGAATCTTCTGATGAGGAGGAGCTTCATGAAGAAAGGCGGAAAAAGAGTAAAAAGTCTCATTCTAAGAACTCAGACAAGGAGCGTTCTAAGAAGCACAGGTCCAAAGATAAATCTAAGCATAAGAAAAAGAAAAGGGAGGAGAAACGAAGTAAACATCATCACTGA 2631 0.2744 MGYEYILGGIIASSLVLVFVIYGSVSKRKAKSSVHAESNGGSIIRTSPENGNHHQEISETTDVIIVGAGVAGAALAYTLGKEGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGLQDCVGEIDAQPVFGYALYKDGKNTKLSYPLENFASDVSGRSFHNGRFIQRMREKASSLPNVKLEQGTVTFLLEEDRIIKGVNFKTKSGQELTAKAPLTIVCDGCFSNLRRSLCNPKVDVPSHFVGLVLENCNLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPGHKLPSLGNGDMARYLKTVVAPQVPPELRDSFIAAVEKGNIRSMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVLLRNLLRPLHDLHDANALCKYLESFYTLRKPVASTINTLAGALYKVFCASPDPASKEMRQACFDYLSLGGVFSDGPIALLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPKRMWIGARLISGASAIIFPIIKAEGIRQMDRIRCRDLQPKENSTTSLSLSLSLTGIATSGATVTDRRETSTSEPAAATSTTTAHFNSLSAKKIVTQMDLETENRLAAMLMREAAELRRQSEREGVLAYLRKPNIRTRPNSRFLTATVRGVQQANRAVEVNEMWRLRQKELELDKRVKEKSLGKSSRDRSHGDDNSSRGTGRHASIDNSTSTSSSSRSGKREYELDKWVKDTSKDKSSGDRSYRAGNSSRSAGRHAAVDKSTSAHASCSSEREYEHGLEGLKDEELEEFLHSRTKRGRGAVGPRMDETGPYLPHLEGEPSTSPDVREHRVIYGPEKPLSLRPYESSDEEELHEERRKKSKKSHSKNSDKERSKKHRSKDKSKHKKKKREEKRSKHHH 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00586 876 MobiDBLite consensus disorder prediction 820 836 - -
Gma15g00586 876 MobiDBLite consensus disorder prediction 837 876 - -
Gma15g00586 876 Pfam Squalene epoxidase 211 484 IPR013698 GO:0004506|GO:0016021|GO:0050660
Gma15g00586 876 MobiDBLite consensus disorder prediction 748 781 - -
Gma15g00586 876 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 509 - -
Gma15g00586 876 MobiDBLite consensus disorder prediction 698 720 - -
Gma15g00586 876 MobiDBLite consensus disorder prediction 656 876 - -
Gma15g00586 876 SUPERFAMILY FAD/NAD(P)-binding domain 61 436 IPR036188 -
Gma15g00586 876 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 211 226 - -
Gma15g00586 876 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 339 354 - -
Gma15g00586 876 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 354 370 - -
Gma15g00586 876 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 62 84 - -
Gma15g00586 876 MobiDBLite consensus disorder prediction 656 679 - -
Gma15g00586 876 Pfam NAD(P)-binding Rossmann-like domain 65 91 - -
Gma15g00586 876 MobiDBLite consensus disorder prediction 799 813 - -
Gma15g00586 876 Coils Coil 579 599 - -
Gma15g00586 876 MobiDBLite consensus disorder prediction 680 697 - -
Gma15g00586 876 PANTHER SQUALENE MONOOXYGENASE 1 509 IPR040125 GO:0004506|GO:0016126
Gma15g00586 876 Gene3D - 49 415 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00586 Gma-Chr15 4847571 4855754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00586 60 509 Miscellaneous Gene Families AT1G58440 80.000 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00586 K00511 - gmx:100795027 1006.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00586 15 4847571 4855754 Gma15g00586 15 4847571 4855754 ECH
Gma15g00586 15 4847571 4855754 Gma13g02252 13 37380633 37388257 GST
Gma08g00607 08 4977769 4986832 Gma15g00586 15 4847571 4855754 PCT
Gma15g00586 15 4847571 4855754 Gma08g00607 08 4977769 4986832 PCT