Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02252 ATGGGTTATGAGTATCTTTTGGGAGGGATTATAGCTTCTAGCTTGGTGCTTGTGTTTGTTGTATATGGTTCTGTCTCAAAGAAGATGACCAAAGGTTCAGTAGTACATGCAGAAAGTAATGGTGGTAGTATTATACGGACATCATCAGAAAATAGAAACCACCATCAAGAAATCTCAGAAACTACGGACATCATCATTGTCGGTGCTGGGGTTGCTGGTGCAGCCCTTGCTTACACACTTGGCAAGGAAGGAAGGCGAGTGCATGTTATTGAAAGGGACTTGACTGAACCAGACAGGATTGTGGGGGAATTGCTACAACCTGGGGGTTATCTCAAGTTAATTGAGTTGGGTCTCCAAGATTGTGTGGATGAGATTGATGCTCAGCAAGTCTTTGGCTATGCTCTTTACAAGGATGGGAAAAATACTAAGCTTTCTTACCCCTTGGAAAAATTTGCCTCTGATGTTTCTGGAAGAAGCTTTCACAATGGCCGTTTCATACAGAGGATGCGAGAAAAAGCTTCATCTCTTCCAAATGTAAAATTAGAACAAGGAACTGTCACATCTCTACTAGAAGAAAATGGAATCATCAAAGGGGTAAACTACAAATCCAAGAGTGGACAAGAGGTCACAGCTAAGGCTTCCCTCACCATAGTATGCGATGGCTGTTTTTCCAACTTGAGACGTTCTCTTTGTAACCCAAAGgttgatgtgccatctcattttgttggtctggttctagagaactgcaatcttccatatgcaaaccatgggcacgttatcttgagtgatccttctcccattttgttttatccaattagtagctctgagattcggtgtttggttgatgttcctggccaaaaattaccttcccttggtaatggtgacatggcacgttatttgaaaacagtagtagctccccaggttcctccagagctgcgtgagtcttttatagcagcagttgagaaaggaaacatgagaagcatgccaaacagaagcatgcctgcatctccttatcctacacctggcgcccttctcatgggagatgccttcaacatgcgtcaccctttaaccggagggggaatgactgtggctttgtctgacattgttttgctaaggaaccttcttagacccctgcatgatctgcatgatgctaatgctctttgcaaatatcttgaatcattctacaccctgcgcaagccagtggcatctacaataaacacactagctggggcactgtacaaggtgttttgtgcatcccctgacccagctagtaaggaaatgcgccaggcatgttttgattatttaagccttggaggtgttttctcagatggaccaatagctctactctctggtctaaatcctcgtccattaagcttggttctccacttctttgccgtggctatatatggcgttggtcgcttactcataccattcccttctccaaaacgcatgtggattggagctagattgatttccggtgcatctgctatcattttccccattatcaaggctgaaggaattagacaaatgttcttcccaGGATCGCGACGAGCGGCACCACCGTCAGTGATCGAAGAGAAACTTCAACAAAGGAACCTGCCGCTGCCACCTCCAACGTGCAATTCAACCCTCTTGCAGCCACAAATTGCCACTCAAATGGATTTGGAGACAGAAAACAGATTAGCTGCCATGCTCATGAGGGAAGCAGCAGAATTACGGCGGCAGTCTGAAAGGGAAGGAGTTCTAGCTTATCTAAGGAAGCCTAATATACATACCCGGCCAAATTCACGTTTTCTTACTGCAACTGTACGTGGAGTGCAACAAGCAAATCGAGCTGTGGAAGTGAATGAGATGTGGCGATTACGGCAAAAAGAACTGGAGCTGGATAAATGGGTTAAAGAAAAATCAATAGATAGAAGCCATAGGGATGATAAGTCATCTAGAGGCACAGGAAGACATGCTGATATTGATAATAGCACTAGGACCTCCTCTGCTTCATGTTCAAGTAAAAGAGAATATGAGCTGGAGAGATGGGTTAAAGACACATCAAAAGATAACAGCAGTAGTGAAAGAAGCCATAGGGATGGAAACTCATCAAGAAGCCCAGGAAGACATGCTGTAGTGGATAAAAGCACTATTGCCTATACTTCAAGCTCAAGTGAAAGAGCCCATGAGCATGGTCTGGAAGGTTTAAAGGATGACGAGCTTGAGGAGTTTCTACACTCAAGGACCAAACGAGGCAGAGGTGCTGTTGGTCCAAGGATGGATGAGACTGGACCTTACCTTCCTCATTCAGACAGGGAGCCTAATACTAGTCCCGATGTTAGGGAACGTCGTGTTATTTACGGTCCAGAGAAGCTGCTGTCGTTGAGACCATATAAATCTTCTGATGAGGATGAGCTTCATGAACAAAGGCGGAAAAAGAGTAAAAAGTCTCATTCTAAGAACTCAGACAAGGAGCGTTCAAAGAAGCACAGGTGA 2481 0.2918 MGYEYLLGGIIASSLVLVFVVYGSVSKKMTKGSVVHAESNGGSIIRTSSENRNHHQEISETTDIIIVGAGVAGAALAYTLGKEGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGLQDCVDEIDAQQVFGYALYKDGKNTKLSYPLEKFASDVSGRSFHNGRFIQRMREKASSLPNVKLEQGTVTSLLEENGIIKGVNYKSKSGQEVTAKASLTIVCDGCFSNLRRSLCNPKVDVPSHFVGLVLENCNLPYANHGHVILSDPSPILFYPISSSEIRCLVDVPGQKLPSLGNGDMARYLKTVVAPQVPPELRESFIAAVEKGNMRSMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVLLRNLLRPLHDLHDANALCKYLESFYTLRKPVASTINTLAGALYKVFCASPDPASKEMRQACFDYLSLGGVFSDGPIALLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPKRMWIGARLISGASAIIFPIIKAEGIRQMFFPGSRRAAPPSVIEEKLQQRNLPLPPPTCNSTLLQPQIATQMDLETENRLAAMLMREAAELRRQSEREGVLAYLRKPNIHTRPNSRFLTATVRGVQQANRAVEVNEMWRLRQKELELDKWVKEKSIDRSHRDDKSSRGTGRHADIDNSTRTSSASCSSKREYELERWVKDTSKDNSSSERSHRDGNSSRSPGRHAVVDKSTIAYTSSSSERAHEHGLEGLKDDELEEFLHSRTKRGRGAVGPRMDETGPYLPHSDREPNTSPDVRERRVIYGPEKLLSLRPYKSSDEDELHEQRRKKSKKSHSKNSDKERSKKHR 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02252 826 MobiDBLite consensus disorder prediction 670 700 - -
Gma13g02252 826 MobiDBLite consensus disorder prediction 722 752 - -
Gma13g02252 826 PANTHER SQUALENE MONOOXYGENASE 1 516 IPR040125 GO:0004506|GO:0016126
Gma13g02252 826 MobiDBLite consensus disorder prediction 636 655 - -
Gma13g02252 826 MobiDBLite consensus disorder prediction 769 784 - -
Gma13g02252 826 Pfam Squalene epoxidase 212 485 IPR013698 GO:0004506|GO:0016021|GO:0050660
Gma13g02252 826 SUPERFAMILY FAD/NAD(P)-binding domain 62 437 IPR036188 -
Gma13g02252 826 Pfam NAD(P)-binding Rossmann-like domain 66 92 - -
Gma13g02252 826 MobiDBLite consensus disorder prediction 636 826 - -
Gma13g02252 826 MobiDBLite consensus disorder prediction 807 826 - -
Gma13g02252 826 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 355 371 - -
Gma13g02252 826 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 63 85 - -
Gma13g02252 826 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 212 227 - -
Gma13g02252 826 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 340 355 - -
Gma13g02252 826 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 516 - -
Gma13g02252 826 MobiDBLite consensus disorder prediction 791 806 - -
Gma13g02252 826 Coils Coil 555 575 - -
Gma13g02252 826 Gene3D - 54 441 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02252 Gma-Chr13 37380633 37388257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02252 61 527 Miscellaneous Gene Families AT1G58440 78.723 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02252 K00511 - gmx:100796946 1004.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02252 13 37380633 37388257 Gma13g02252 13 37380633 37388257 ECH
Gma15g00586 15 4847571 4855754 Gma13g02252 13 37380633 37388257 GST
Gma08g00607 08 4977769 4986832 Gma13g02252 13 37380633 37388257 PCT
Gma13g02252 13 37380633 37388257 Gma08g00607 08 4977769 4986832 PCT