Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00607 ATGGATTATCCGTACATTCTAGGAGGGATCATGGCTTGTAGTTTTGCATTTTTGTATGTTGTGTACAGTTTTGGAGCAAAGAAGGTCACAGATTCAAGTTCAATACATGTAAAGAGTAATGAGTGTGCAAAGACATCATCAGAAGGTGGAATATGTTCTTCAGATGAGGATGCAGGAAGTGCTGACATCATCATTGTGGGTGCTGGGGTTGCTGGTGCAGCTCTTGCTTACACTCTTGGAAAGGATGGACGGCGAGTGCATGTAATTGAAAGGGATTTGAGTGAACCTGACAGGATCGTGGGTGAATTGCTACAACCTGGGGGCTATCTGAGGTTAATTGAGTTGGGCCTTCAGGATTGTGTGGATGAAATTGATTCACAGCAAGTCTTTGGCTATGCTCTGTATATGGATGGCAAAAATACCAAGCTGTCTTATCCTTTGGAAAAATTCAGCTCTGATATTTCTGGGAGAAGCTTTCACAATGGCCGTTTCATACAGAGAATGCGAGAAAAGGCTTCGTCTCTTCCAAAtgtaaaattagaacaaggaactgtcacatctctacttgaagagaaaggaaccatcactggggtgcactacaaaatcaaaagtggacaagagttcacagcaaaggctcccctcaccatagtatgtgatggttgtttttccaacttgaggcgttctctttgcaatcctaaggttgacgttccctctcattttgttggtctggtcttggagaattgtaatcttccatatgcaaatcatggtcacgtcatcttaggtgatccttcacccgttttgttttatcccatcagtagcactgagattcgctgtttggttgatgtgcccggccaaaaattaccttccctaggtggtggtgaaatggcctgttatttgaaaactgtggtggctcctcaggttcctccagagctgtatgattcttttatagcagctattgacaaaggaaacataagaaccatgccaaatagaagcatgcctgcctcaccttatcccacaccaggtgcacttctaatgggagacgccttcaatatgcgtcaccctttaactggaggaggaatgactgtggctttatctgacattgttgtgctaagggatttacttaaacctcttcatgatctgcatgatgcttctgctctttgcagataccttgaatcattctacaccctacgcaagccagtggcatctacaataaacacactagctggggcattgtacaaggtcttttgtgcatctcctgatccagctagaaaggaaatgcgccaagcatgtttcgattacttgagccttggaggtgttttctcagatggaccaatagctctactctctggtctaaatcctcgtccattgagtttggttctccatttcttcgcagtcgctatatacggtgttggccgcctgctcataccatttccttctccaaaacggatgtggattggagctagattgatttcaggtgcatcaggcatcattttccccattattaaggctgaaggaTTTCAACAACGCCACCCTCTTCTTCTTCAGATTGTCATAGCAAGGAAGCTTGTTTGCATATATAATAGAGAAAATGGTACTGTTGTTAGTTTATTGCAGGCATTTCGGAATGCAATTAAAGAAGCTGCCATTGCACAGCATTTTGAGCTTCGTACTATTAAAAGTGACCTGATTCGCTACTTTGCTAAGTGTGCCTCAGATGGCTGTCCATGGCGGATTCGTGCTGTCAAGCTCCCTAATGCCCCAACATTTACTATTAGAAGTATTGATGGGACACATACCTGTGGGAGAAATGCAAACAATGGGCACCATCAGGCTTCTGTTGATTGGATTGTGAGTTTCATAGAAGAAAGGTTGCGAGATAACATCAATTATAAACCAAAAGATATTTTGCATGACATCCATAAACAATATGGTATAACCATACCATATAAGCAAGCTTGGCGTGCAAAGGAGAGGGGTCTTGCGGCTATATATGGCTCTTCTGAAGAAGGATATTACCTACTTCCTTCATACTGTGAACAAATTAAGAAAACAAATCCTGGAAGTGTTGCAGAGGTACTAGAGGTGAATACTGAATGCATGCCAAAGTTTATATTTTTGTCAGATGGGCAAAAGGGTATTACAGATGCAGTAAGAAGGAAGTTCCCAAGTTCTTCTCATGCACTCTGCATGCGTCACTTGACTGAAAGCATTGGCAAAGAGTTCAAGAACTCTAGGCTTGTGCATCTTCTGTGGAAGGCTTCACATGCCACAACAACCATTGCATTTAAAGAAAAAATGGGTGAAATAGAGGAGGTTTCTCCTGAAGCTGCCAAATGGTTACAACAATTTCATCCTTCTCAATGGGCCCTTGTACATTTTAAAGGAACTCGGTTTGGCCATCTATCCTCTAACATTGAGGAGTTCAATAAATGGATTCTTGACACCCGGGAATTGCCAATTATTCAGGTGATTGAGCGGATTCATAGCAAGCTTAAAACTGAGTTTGATGACAGGCGTTTAAAAAGCAGCTCATGGTGCTCTGTACTTGCCCCATCAGCCGAGAAGCTAATGACTGAAGCCATTGACCATGCATCTACATATCAAGTCCTTAGATCTGATGAAGTAGAGTTTGAGGTTCTTTCAGCCGATCGATCAGATATTGTAAATATTGGCAGCCATAGCTGTTCCTGCCGTGATTGGCAGTTAAACGGTATTCCATGTTCCCATGCTACTGCTGCTCTTATCTCTTGTCGAAAGGATGTTTATGCATTTACCCAGAAGTGTTTTACTGCTGCAAGTTACAGGAATACCTACGCAGAAGCTATACACCACATCCCAGGAAAACTTGAATGGAGTAAAACAGATGATAAGTCTTCTATGGATGATAATATCCTTGTTGTAAGGCCACCAAAATTACGACGACCACCGGGACGCCCTGAGAAACAGATGTGTGTGGATGACCTTAATCGAGAGAAGCATACAGTGCATTGTAGTCGGTGTAATCAAACTGGACATTACAAGAGAACTTGTAAAGCTGAGATGATTAATAGTATAGAGCAGTTTTAG 3066 0.2828 MDYPYILGGIMACSFAFLYVVYSFGAKKVTDSSSIHVKSNECAKTSSEGGICSSDEDAGSADIIIVGAGVAGAALAYTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLRLIELGLQDCVDEIDSQQVFGYALYMDGKNTKLSYPLEKFSSDISGRSFHNGRFIQRMREKASSLPNVKLEQGTVTSLLEEKGTITGVHYKIKSGQEFTAKAPLTIVCDGCFSNLRRSLCNPKVDVPSHFVGLVLENCNLPYANHGHVILGDPSPVLFYPISSTEIRCLVDVPGQKLPSLGGGEMACYLKTVVAPQVPPELYDSFIAAIDKGNIRTMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRDLLKPLHDLHDASALCRYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGVFSDGPIALLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPKRMWIGARLISGASGIIFPIIKAEGFQQRHPLLLQIVIARKLVCIYNRENGTVVSLLQAFRNAIKEAAIAQHFELRTIKSDLIRYFAKCASDGCPWRIRAVKLPNAPTFTIRSIDGTHTCGRNANNGHHQASVDWIVSFIEERLRDNINYKPKDILHDIHKQYGITIPYKQAWRAKERGLAAIYGSSEEGYYLLPSYCEQIKKTNPGSVAEVLEVNTECMPKFIFLSDGQKGITDAVRRKFPSSSHALCMRHLTESIGKEFKNSRLVHLLWKASHATTTIAFKEKMGEIEEVSPEAAKWLQQFHPSQWALVHFKGTRFGHLSSNIEEFNKWILDTRELPIIQVIERIHSKLKTEFDDRRLKSSSWCSVLAPSAEKLMTEAIDHASTYQVLRSDEVEFEVLSADRSDIVNIGSHSCSCRDWQLNGIPCSHATAALISCRKDVYAFTQKCFTAASYRNTYAEAIHHIPGKLEWSKTDDKSSMDDNILVVRPPKLRRPPGRPEKQMCVDDLNREKHTVHCSRCNQTGHYKRTCKAEMINSIEQF 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00607 1021 SMART 26again6 893 920 IPR006564 GO:0008270
Gma08g00607 1021 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 509 - -
Gma08g00607 1021 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 354 370 - -
Gma08g00607 1021 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 211 226 - -
Gma08g00607 1021 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 62 84 - -
Gma08g00607 1021 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 339 354 - -
Gma08g00607 1021 ProSiteProfiles Zinc finger CCHC-type profile. 997 1011 IPR001878 GO:0003676|GO:0008270
Gma08g00607 1021 ProSiteProfiles Zinc finger SWIM-type profile. 877 918 IPR007527 GO:0008270
Gma08g00607 1021 Gene3D - 54 441 IPR036188 -
Gma08g00607 1021 SUPERFAMILY FAD/NAD(P)-binding domain 61 436 IPR036188 -
Gma08g00607 1021 Pfam SWIM zinc finger 884 917 IPR007527 GO:0008270
Gma08g00607 1021 Pfam NAD(P)-binding Rossmann-like domain 65 91 - -
Gma08g00607 1021 Pfam Squalene epoxidase 211 484 IPR013698 GO:0004506|GO:0016021|GO:0050660
Gma08g00607 1021 PANTHER SQUALENE MONOOXYGENASE 1 509 IPR040125 GO:0004506|GO:0016126
Gma08g00607 1021 Pfam MuDR family transposase 537 591 IPR004332 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00607 Gma-Chr8 4977769 4986832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00607 61 508 Miscellaneous Gene Families AT1G58440 80.357 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00607 K00511 - gmx:100808856 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00607 08 4977769 4986832 Gma15g00586 15 4847571 4855754 PCT
Gma08g00607 08 4977769 4986832 Gma13g02252 13 37380633 37388257 PCT
Gma15g00586 15 4847571 4855754 Gma08g00607 08 4977769 4986832 PCT
Gma13g02252 13 37380633 37388257 Gma08g00607 08 4977769 4986832 PCT