Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00250 ATGCTTGGGGGTCTTCTCCATAGGGGTCATAAGATAAAAGGGACAGTGGTGTTGATGCGCAAGAATGTGTTGGACGTGAATAGCGTAACCAGCGTTGGGGGAATTATTGGTCAAGGTCTCGACTTAGTTGGCTCAACACTCGATACTCTTACTGCCTTCTTGGGCCGATCCGTGTCTCTCCAGCTTATTAGTGCTACCAAAGCTGATGCCAACGGAAAAGGGAAACTTGGAAAGGCTACCTTTTTGGAAGGTATCATTACTTCATTGCCAACTTTGGGAGCAGGCCAATCTGCATTCAAAATTAATTTTGAATGGGATGATGGGAGTGGAATTCCTGGAGCATTTTATATCAAGAATTTTATGCAAACTGAGTTTTTCCTTGTGAGTTTGACTCTTGAAGACATTCCAAACCATGGAAGCATCCACTTTGTTTGCAATTCGTGGATTTACAATGCCAAACTCTTCAAAAGTGACCGCATTTTCTTTGCCAACCAGACATATCTTCCAAGTGAGACACCAGCTCCACTAGTCAAATATAGAGAAGAAGAGTTGCATAATTTAAGAGGAGATGGAACTGGAGAACGCAAAGAGTGGGAAAGGATCTATGATTATGATGTCTACAATGATTTAGGTGATCCGGATAAAGGTGAAAATCATGCCCGTCCTGTTCTTGGAGGAAATGACACCTTTCCTTATCCTCGTAGGGGGAGAACTGGTAGAAAACCAACAAGGAAAGATCCTAATAGTGAGAGTAGGAGCAATGATGTTTATCTTCCAAGAGATGAGGCTTTTGGACACTTGAAGTCATCTGACTTTCTTACTTATGGACTAAAATCCGTATCTCAAAATGTTCTTCCATTATTGCAATCTGCTTTTGATTTGAATTTCACACCCCGTGAGTTTGATAGCTTTGATGAAGTTCATGGACTCTATTCAGGCGGAATTAAGCTGCCAACAGATATAATCAGCAAGATTAGTCCACTACCCGTGCTTAAGGAAATCTTCCGAACTGATGGTGAACAGGCCCTTAAGTTTCCTCCTCCTAAAGTAATTCAAGTGAGTAAGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAAATGCTTGCTGGTGTAAATCCAAACTTGATTCGTTGTCTTAAGGAGTTCCCTCCACGAAGCAAGCTAGATAGCCAAGTCTATGGTGATCATACTAGTCAAATAACCAAAGAACACCTAGAGCCCAACTTAGAAGGGCTCACTGTAGATGAGgcaattcaaaacaagagattgttcctactagatcatcatgacccaatcatgccatatttgaggcgaataaatgcaacctccacaaaggcttatgctaccagaaccatccttttcctgaaaaatgacggaactttaagaccacttgccatagagttgagtttgccacatcctcagggagatcaatctggtgcttttagtcaagtttttctgcctgcagatgaaggtgttgaaagttctatttggctgctagcaaaggcttatgtagttgtgaatgactcgtgctatcatcaacttgtcagccattggttaaacactcatgcagttgttgagccattcatcatagcaacaaacaggcatctcagtgttgttcaccctatttataaactccttcaccctcactatcgtgacaccatgaacataaatggccttgctcggttatcactggtcaacgacggtggcgttatagaacaaacatttttgtggggaaggtattctgtggaaatgtctgctgtagtttacaaggattgggtttttacagatcaagcattgcctgctgatcttataaaaagAGGAATGGCAATTGAGGATCCATCGTGCCCTCATGGCATTCGCCTTGTGATAGAGGACTACCCTTATGCTGTTGATGGACTTGAGATATGGGATGCTATCAAGACATGGGTCCATGAATACGTTTTCTTGTACTACAAATCAGATGACACACTTAGAGAAGATCCTGAACTCCAAGCCTGCTGGAAAGAACTCGTAGAGGTGGGTCATGGAGACAAGAAAAATGAGCCATGGTGGCCTAAGATGCAAACTCGTGAAGAGCTAGTTGAAGCTTGCGCTATCATCATATGGACTGCTTCAGCACTTCATGCAGCTGTTAATTTTGGACAGTATCCCTATGGAGGTTTAATCTTAAACCGTCCAACTCTTAGTAGGCGATTCATGCCTGAGAAAGGTTCTGCTGAGTATGAGGAGCTGAGGAAGAATCCCCAGAAGGCTTACttgaagactattacaccaaagtttcagacccttattgacctttctgttatagaaatcttgtcaaggcatgcatctgatgaggtgtaccttggggagagggacaatccaaattggacatctgatacaagagcgttagaggcttttaaaaggtttggaaataaactggcacaaattgagaataaactctcagagagaaacaacgatgagaaactgagaaaccgttgtggaccagttcaaatgccttatactctgcttttgccttctagtaaggaaggattaactttcagaggaattcccaacagtatctctatctga 2574 0.2809 MLGGLLHRGHKIKGTVVLMRKNVLDVNSVTSVGGIIGQGLDLVGSTLDTLTAFLGRSVSLQLISATKADANGKGKLGKATFLEGIITSLPTLGAGQSAFKINFEWDDGSGIPGAFYIKNFMQTEFFLVSLTLEDIPNHGSIHFVCNSWIYNAKLFKSDRIFFANQTYLPSETPAPLVKYREEELHNLRGDGTGERKEWERIYDYDVYNDLGDPDKGENHARPVLGGNDTFPYPRRGRTGRKPTRKDPNSESRSNDVYLPRDEAFGHLKSSDFLTYGLKSVSQNVLPLLQSAFDLNFTPREFDSFDEVHGLYSGGIKLPTDIISKISPLPVLKEIFRTDGEQALKFPPPKVIQVSKSAWMTDEEFAREMLAGVNPNLIRCLKEFPPRSKLDSQVYGDHTSQITKEHLEPNLEGLTVDEAIQNKRLFLLDHHDPIMPYLRRINATSTKAYATRTILFLKNDGTLRPLAIELSLPHPQGDQSGAFSQVFLPADEGVESSIWLLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFIIATNRHLSVVHPIYKLLHPHYRDTMNINGLARLSLVNDGGVIEQTFLWGRYSVEMSAVVYKDWVFTDQALPADLIKRGMAIEDPSCPHGIRLVIEDYPYAVDGLEIWDAIKTWVHEYVFLYYKSDDTLREDPELQACWKELVEVGHGDKKNEPWWPKMQTREELVEACAIIIWTASALHAAVNFGQYPYGGLILNRPTLSRRFMPEKGSAEYEELRKNPQKAYLKTITPKFQTLIDLSVIEILSRHASDEVYLGERDNPNWTSDTRALEAFKRFGNKLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSKEGLTFRGIPNSISI 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00250 857 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 166 857 IPR013819 GO:0016702|GO:0046872
Gma15g00250 857 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE-3 1 857 - -
Gma15g00250 857 CDD PLAT_LH2 10 164 IPR042057 -
Gma15g00250 857 PANTHER LIPOXYGENASE 1 857 IPR000907 GO:0016702|GO:0046872
Gma15g00250 857 Gene3D PLAT/LH2 domain 1 167 - -
Gma15g00250 857 Pfam PLAT/LH2 domain 65 162 IPR001024 GO:0005515
Gma15g00250 857 Pfam Lipoxygenase 176 840 IPR013819 GO:0016702|GO:0046872
Gma15g00250 857 Gene3D - 268 356 IPR027433 -
Gma15g00250 857 Gene3D - 491 856 - -
Gma15g00250 857 PRINTS Plant lipoxygenase signature 133 151 IPR001246 GO:0016491
Gma15g00250 857 PRINTS Plant lipoxygenase signature 159 180 IPR001246 GO:0016491
Gma15g00250 857 PRINTS Plant lipoxygenase signature 198 214 IPR001246 GO:0016491
Gma15g00250 857 PRINTS Plant lipoxygenase signature 231 250 IPR001246 GO:0016491
Gma15g00250 857 PRINTS Plant lipoxygenase signature 298 319 IPR001246 GO:0016491
Gma15g00250 857 PRINTS Plant lipoxygenase signature 343 359 IPR001246 GO:0016491
Gma15g00250 857 PRINTS Plant lipoxygenase signature 382 401 IPR001246 GO:0016491
Gma15g00250 857 PRINTS Plant lipoxygenase signature 448 472 IPR001246 GO:0016491
Gma15g00250 857 PRINTS Plant lipoxygenase signature 770 784 IPR001246 GO:0016491
Gma15g00250 857 ProSitePatterns Lipoxygenases iron-binding region signature 2. 540 550 IPR020834 GO:0016702|GO:0046872
Gma15g00250 857 MobiDBLite consensus disorder prediction 213 257 - -
Gma15g00250 857 ProSiteProfiles PLAT domain profile. 38 163 IPR001024 GO:0005515
Gma15g00250 857 ProSitePatterns Lipoxygenases iron-binding region signature 1. 513 527 IPR020833 GO:0016702|GO:0046872
Gma15g00250 857 MobiDBLite consensus disorder prediction 242 257 - -
Gma15g00250 857 SMART LH2_4 10 164 IPR001024 GO:0005515
Gma15g00250 857 PRINTS Lipoxygenase signature 495 512 IPR013819 GO:0016702|GO:0046872
Gma15g00250 857 PRINTS Lipoxygenase signature 513 530 IPR013819 GO:0016702|GO:0046872
Gma15g00250 857 PRINTS Lipoxygenase signature 533 553 IPR013819 GO:0016702|GO:0046872
Gma15g00250 857 Gene3D - 357 490 - -
Gma15g00250 857 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 9 167 IPR036392 GO:0005515
Gma15g00250 857 SUPERFAMILY Lipoxigenase 168 857 IPR036226 -
Gma15g00250 857 Gene3D - 168 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00250 Gma-Chr15 2182080 2186414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00250 3 857 Acyl Lipid Metabolism Gene Families AT1G55020 60.784 0.0 1087
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00250 K15718 - gmx:547869 1733.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03115 13 45348570 45354165 Gma15g00250 15 2182080 2186414 GST
Gma15g00250 15 2182080 2186414 Gma07g00064 07 510463 521629 PCT