Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03115 ATGTTTGGAATCATCGGAGGAAACAAGGGTCACAAGATAAAGGGGAACTTGGTGATTATGCGAAAGAATGTGTTGGATATCAACAGCATCACCAGTGTTAAGGGTGTCATTGGAACCGGCATTAACATCATTGGAGGTGTCGTCGACACCGTTACTGCTTTGGCGTCCCACATCTCCATCCAGCTCATTAGTGCCACCAAGGCTGATGGACATGGGAAAGGTAAAGTTGGAAAGGCTACAAATTTAAGAGGACAAGTGTCGTTGCCAACCTTGGGAGCTGGCGAAGATGCATACGATGTTAATTTTGAATGGGACAGTGACTTCGGAATTCCCGGTGCATTTTACATAAAGAACTTCATGCAAGTTGAGTTCTATCTCAAGTCTCTAACTCTCGAAGATATTCCAAACCACGGAACCATTCACTTCGTATGCAACTCCTGGGTTTACAATTCAAAAAACTACAAGACTGATCGCATTTTCTTTGCCAACAATACATATCTTCCAAGCGAGACACCAGCTCCACTTTTGAAGTACAGAGAAGAAGAATTGAAGAATGTAAGAGGGGATGGAACTGGAGAGCGCAAGGAATGGGATAGGATCTATGATTATGATGTTTACAATGACTTGGGCAACCCGGATAGCGGTGATAAATATGCACGCCCCGTTCTTGGTGGTTCAGCCTTACCTTACCCTCGCAGAGGAAGAACCGGAAGAGGAAAAACTAGAAAAGATCCCAACAGTGAGAAGCCGAGCGATTTTGTTTACCTTCCAAGAGATGAAGCATTTGGTCACTTGAAGTCATCAGATTTTCTCGCTTATGGAATCAAATCTGTATCCCAAGATGTCTTGCCTGTCTTGACTGATGCATTCGATGGAAATATTTTGAGCCTTGAGTTTGATAATTTTGCTGAAGTGCGCAAACTCTATGAAGGTGGAGTTACACTACCTACAAACTTTCTTAGCAAGATCGCCCCTATACCAGTGATCAAGGAAATTTTTCGAACTGATGGCGAACAGTTCCTCAAGTATCCACCACCTAAAGTGATGCAGGTGGATAAGTCTGCATGGATGACTGATGAAGAATTTGCTAGAGAAACGATTGCTGGTGTAAATCCAAACGTCATTAAGATTCTTGAGGAGTTCCCACCACGTAGCAAGCTAGATACACAAGCCTACGGTGATCATACCTGTATAATAACAAAACAACATTTGGAACCTAACTTGGGTGGGCTCACTGTTGAGCAGgctatccagagcaagaagctgttcatcttagatcaccatgactatctcattccatatttgaggaaaataaatgcaactaccacaaagacttatgctaccagaaccatatttttcttgaaaagtgatggaactttgacgccattggccattgagttaagtaagccgcatcctcaaggtgaagaatatggtcctgttagcgaagtctacgtgccttcgagcgaaggagttgaagcttatatttggttattggcaaaggcttatgttgttgtaaatgactcgtgctaccatcaactcgttagccattggctaaacactcatgcggttgttgagccattcgtcatagcaacaaataggcatctgagtgtggttcaccctatttacaaacttttgtttcctcactatcgtgacaccatgaatattaattcacttgcccgcaaatccttggtcaatgcagacggtattatagagaaaacatttttgtggggtaggtacgctttggaaatgtctgctgttgtttacaaggactgggttttcactgatcaagcactgcccaatgatcttgtcaagagAGGAGTTGCCGTTAAGGATCCATCTGCTCCCCATGGAGTTCGGCTTTTGATTGAGGACTATCCTTATGCTTCTGATGGGCTAGAGATATGGGATGCCATCAAGTCCTGGGTGCAAGAATATGTGTCATTCTACTACAAGTCAGATGCAGCAATTCAACAAGACCCCGAACTCCAAGCTTGGTGGAAAGAACTTGTCCAAGTGGGTCATGGTGATTTGAAAGATAAGCCATGGTGGCAAAAGATGCAAACTTGTGAAGAGTTGATTGAAGCCTCGGCCACCCTCATATGGATCGCTTCAGCCCTTCATGCAGCTGTTAACTTTGGACAGTATCCATATGGAGGTTTAATCTTGAACAGGCCAACCATTAGCAGGAGATTCATGCCTGAGAAAGGGTCTGCTGAGTATGCTGCTTTGGCTAAGAACCCTGAGAAGGAGTttttgaaaactattactggcaagaaggagaccctcattgaccttacaattatagaaatcctgtcaaggcacgcatctgatgagttctaccttggggagagagatggtggtgacttctggacttctgatgctggtccactagaggccttcaagagtcctatttcCGTGATCCAGTGCATGGATTGCAGCAAACCAAGCGTCTCACCTTCGTTGACTTGCTGCACTGAATTTATCATCACAAGGTAG 2496 0.3133 MFGIIGGNKGHKIKGNLVIMRKNVLDINSITSVKGVIGTGINIIGGVVDTVTALASHISIQLISATKADGHGKGKVGKATNLRGQVSLPTLGAGEDAYDVNFEWDSDFGIPGAFYIKNFMQVEFYLKSLTLEDIPNHGTIHFVCNSWVYNSKNYKTDRIFFANNTYLPSETPAPLLKYREEELKNVRGDGTGERKEWDRIYDYDVYNDLGNPDSGDKYARPVLGGSALPYPRRGRTGRGKTRKDPNSEKPSDFVYLPRDEAFGHLKSSDFLAYGIKSVSQDVLPVLTDAFDGNILSLEFDNFAEVRKLYEGGVTLPTNFLSKIAPIPVIKEIFRTDGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGVNPNVIKILEEFPPRSKLDTQAYGDHTCIITKQHLEPNLGGLTVEQAIQSKKLFILDHHDYLIPYLRKINATTTKTYATRTIFFLKSDGTLTPLAIELSKPHPQGEEYGPVSEVYVPSSEGVEAYIWLLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFVIATNRHLSVVHPIYKLLFPHYRDTMNINSLARKSLVNADGIIEKTFLWGRYALEMSAVVYKDWVFTDQALPNDLVKRGVAVKDPSAPHGVRLLIEDYPYASDGLEIWDAIKSWVQEYVSFYYKSDAAIQQDPELQAWWKELVQVGHGDLKDKPWWQKMQTCEELIEASATLIWIASALHAAVNFGQYPYGGLILNRPTISRRFMPEKGSAEYAALAKNPEKEFLKTITGKKETLIDLTIIEILSRHASDEFYLGERDGGDFWTSDAGPLEAFKSPISVIQCMDCSKPSVSPSLTCCTEFIITR 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03115 831 Gene3D - 266 354 IPR027433 -
Gma13g03115 831 Pfam Lipoxygenase 175 802 IPR013819 GO:0016702|GO:0046872
Gma13g03115 831 PRINTS Lipoxygenase signature 531 551 IPR013819 GO:0016702|GO:0046872
Gma13g03115 831 PRINTS Lipoxygenase signature 493 510 IPR013819 GO:0016702|GO:0046872
Gma13g03115 831 PRINTS Lipoxygenase signature 511 528 IPR013819 GO:0016702|GO:0046872
Gma13g03115 831 PANTHER LINOLEATE 9S-LIPOXYGENASE-4 6 801 - -
Gma13g03115 831 PRINTS Plant lipoxygenase signature 341 357 IPR001246 GO:0016491
Gma13g03115 831 PRINTS Plant lipoxygenase signature 296 317 IPR001246 GO:0016491
Gma13g03115 831 PRINTS Plant lipoxygenase signature 132 150 IPR001246 GO:0016491
Gma13g03115 831 PRINTS Plant lipoxygenase signature 197 213 IPR001246 GO:0016491
Gma13g03115 831 PRINTS Plant lipoxygenase signature 229 248 IPR001246 GO:0016491
Gma13g03115 831 PRINTS Plant lipoxygenase signature 380 399 IPR001246 GO:0016491
Gma13g03115 831 PRINTS Plant lipoxygenase signature 158 179 IPR001246 GO:0016491
Gma13g03115 831 PRINTS Plant lipoxygenase signature 446 470 IPR001246 GO:0016491
Gma13g03115 831 PRINTS Plant lipoxygenase signature 768 782 IPR001246 GO:0016491
Gma13g03115 831 Gene3D - 489 805 - -
Gma13g03115 831 SMART LH2_4 11 163 IPR001024 GO:0005515
Gma13g03115 831 CDD PLAT_LH2 11 163 IPR042057 -
Gma13g03115 831 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 165 831 IPR013819 GO:0016702|GO:0046872
Gma13g03115 831 ProSitePatterns Lipoxygenases iron-binding region signature 1. 511 525 IPR020833 GO:0016702|GO:0046872
Gma13g03115 831 SUPERFAMILY Lipoxigenase 167 801 IPR036226 -
Gma13g03115 831 Gene3D PLAT/LH2 domain 3 166 - -
Gma13g03115 831 ProSiteProfiles PLAT domain profile. 37 162 IPR001024 GO:0005515
Gma13g03115 831 MobiDBLite consensus disorder prediction 216 252 - -
Gma13g03115 831 Gene3D - 167 265 - -
Gma13g03115 831 Gene3D - 355 488 - -
Gma13g03115 831 Pfam PLAT/LH2 domain 70 161 IPR001024 GO:0005515
Gma13g03115 831 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 10 166 IPR036392 GO:0005515
Gma13g03115 831 ProSitePatterns Lipoxygenases iron-binding region signature 2. 538 548 IPR020834 GO:0016702|GO:0046872
Gma13g03115 831 PANTHER LIPOXYGENASE 6 801 IPR000907 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03115 Gma-Chr13 45348570 45354165 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03115 1 801 Acyl Lipid Metabolism Gene Families AT1G55020 55.704 0.0 927
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03115 K15718 - gmx:547860 1582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03115 13 45348570 45354165 Gma15g00250 15 2182080 2186414 GST
Gma13g03115 13 45348570 45354165 Gma07g00064 07 510463 521629 PCT