Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03240 ATGGAAATGAAGAAGCCGTGTTGTGAAGAGTCAGAGACAATTGTTGGATCCTGGGAATGTTGGTTCGACGATGCATGCATCGTTGACATGGATTACTTTGTGAAGACCCTTTCAAGCATCAAACAGAAAGGTGTTCGTGCAGACTTGATTGGTTCCATCATCACTCATTATGCCTCCATATGGCTCCCTGACCTCTCTTCCTCTGCTGAAAATGGTGTCACCACTCACTTCCAATCCCCCGAAAGCGTCACAAATTCATGGATGAAGAAGAGGTTCTTTGTGGAAACCTTGGTGAGTGTTCTGCCTCCTGAGAAGGATTCTGTCCCATGCAACTTCCTCCTTCGCCTTCTCAGAACCGCCAACATGGTTCGTGTTGACGCCACTTATAGAGGTGAGCTTGAGAACCGGATTTCGTGGCAGCTAGACCAAGCTTCTCTCAAAGAGCTCATGATACCCTCCTTCAGCCACACGTGTGGGACACTCTTGGATGTTGAGCTAGTCCTCAGGTTGGTTAAGAGGTTTATGAGTTTGGACCGTGATGGTGCTGCTTTGGTTAaggtggccaagttggttgattgctacctcgctgaggctgctgtggatgccaatttgaccttgtctgagttcattgcacttgctggagctcttccaagtcattcaagagccacggatgatggcttgtaccgagccattgacacgtatctaaaaGCACATCCAGATGTGTCAAAGCAAGAAAGGAAGGGCCTGTGTAGGCTGCTTGATAGCCGGAAACTCACAACGGAGGCCTCACTTCATGCAGCTCAGAATGAACGGTTGCCTGTGAGAGCTGTGATTCAGGTGCTCTTCTCCGAACAAACCAAACTCAACCGCCACATAGATTGGAGTGGCTCCTTCAGTAGCTTGAGGAGCCCCAATGGAGGCCTTGACCCACCAGGACGATGCCTTTCAAAGCGTGAAACAAATGCTCAGCAAATGGAGATAAGGAAGCTGAAGGAAGATGTTTACAGGCTGCAAAGCCAGTTCAATGCCATGCAAGGGCAGATGGAGAGAATGGCGGCGAAGAAGAAGGGCTTATTCAAATGGAGGAAGTTTGGAATGCCTACGTTTAGCAGAAATGTAGGAGAGGTGGAGAAAATTGAAGAAGAAGAGGAAGAGGAGGAGGCTGAAAGGGAAGTTGGATTTGGAAGACAAACACCTATGGACATGAAAACCAGTCTGGTCAAAAGGACTCCCCACAAGTGGAGGAAATCCATGTCCTGA 1260 0.4254 MEMKKPCCEESETIVGSWECWFDDACIVDMDYFVKTLSSIKQKGVRADLIGSIITHYASIWLPDLSSSAENGVTTHFQSPESVTNSWMKKRFFVETLVSVLPPEKDSVPCNFLLRLLRTANMVRVDATYRGELENRISWQLDQASLKELMIPSFSHTCGTLLDVELVLRLVKRFMSLDRDGAALVKVAKLVDCYLAEAAVDANLTLSEFIALAGALPSHSRATDDGLYRAIDTYLKAHPDVSKQERKGLCRLLDSRKLTTEASLHAAQNERLPVRAVIQVLFSEQTKLNRHIDWSGSFSSLRSPNGGLDPPGRCLSKRETNAQQMEIRKLKEDVYRLQSQFNAMQGQMERMAAKKKGLFKWRKFGMPTFSRNVGEVEKIEEEEEEEEAEREVGFGRQTPMDMKTSLVKRTPHKWRKSMS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03240 419 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 17 419 - -
Gma13g03240 419 MobiDBLite consensus disorder prediction 376 419 - -
Gma13g03240 419 PANTHER OS12G0117600 PROTEIN 17 419 IPR043454 -
Gma13g03240 419 Coils Coil 371 391 - -
Gma13g03240 419 Pfam NPH3 family 20 263 IPR027356 -
Gma13g03240 419 ProSiteProfiles NPH3 domain profile. 19 287 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03240 Gma-Chr13 46458388 46461104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03240 21 350 EF-hand Containing Proteins AT3G44820 31.452 1.54e-50 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03240 - - gmx:100777820 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03240 13 46458388 46461104 Gma13g03240 13 46458388 46461104 ECH
Gma13g03240 13 46458388 46461104 Gma07g00311 07 2651355 2653694 PCT
Gma13g03240 13 46458388 46461104 Gma08g01915 08 17217794 17224500 PCT
Gma07g00311 07 2651355 2653694 Gma13g03240 13 46458388 46461104 PCT
Gma08g01915 08 17217794 17224500 Gma13g03240 13 46458388 46461104 PCT