Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01915 ATGCCTAGTACTACACCAACTGGTTCCTCCTCTACTAGTCTGTTTGAGCTTCTCACCGAAATGAAGAAGCAATCCTATCCAGAATCACTCACCTTCCAAGCAAAATCTCCCTCCCAATTCTCCTCCGAATGCTGGTTCGACGATGCATGCATCCTGGACATGGATTACTTCGTCAAGACCCTTTCTGGCATCAAGGCCAAAGGTGTTCGTGCAGACCTTATCGGCTCCATCATCACACACTACGCCTCCAAATGGCTCCCTGACCTCTCGGCAGGTGACATGGCCGAAAGGGGTCTAACCCAATTCGAGGAATCGCCCGAAAGCGTGACAGCTTCATGGATGAAGAAGAGATTCTTCGTGGAAACCTTGGTGGGTGTTCTGCCTCCTGAGAAGGATGCAATTCCATGCAACTTTCTCCTTCGGCTTCTGAGAACAGCCAACATGGTTGGTGTTGAGGGTACCTACAGGCAAGAGCTTGAGAAGCGGATTTCGTGGCAGTTGGACCAGGCTTCCTTGAAGGAGTTGGTGATTCCCTCTTTCAGCCACACTTGCGGGACTCTATTGGATGTTGAGTTGGTCATTAGGCTGGTTAAGAGGTTTGTGAGTTTGGACAGTGAGGGAGCTAAGAGTGGTGCTTCTCTGGTTAAGGTGGCTAAGTTGGTTGATTCCTACCTCGCTGAGGCTGCTGTGGATGCCAATTTGAGCTTGAACGACTTCTTTACCCTTGCTGCAGCTCTTCCTAGCCATGCCAGAGCAACGGATGATGGCTTGTACAGAGCCATTGATACTTATCTAAAAGCACATTCAGGAGTGTCAAAGCAAGAAAGGAAGGGTCTGTGCAGGCTAATAGACAGCAGAAAACTAACACCAGAGGCATCACTTCACGCAGCACAAAACGAACGGTTCCCGGTGAGAGCAGTGATTCAGGTGCTACTCTCCGAGCAGAGCAAGCTGAACCGCCATGTGGATTGGAGCGGCTCGCTGGTGAGTGGAACAAGAAGCCCTGGAGGGTTGGACTTACCAACACGGTGTCTGTCGAAGCGCGAGGCGAATGCTCAACAACTCGAGATAAAGAGGCTGAAGGAAGACGTGTACAGGCTGCAAAGCCAGTGCAGTGCCATGCATGCACAGATGGAGAGAATGGTTGAGAAGAAGAAAGGCTTCTTCAAGTGGAAGAAGTTTGCATTTGGTAAAAGTGAGCATGACAAAATGGAACAAGAGCTTGAAGGAAATGGAATGTACACTCCTGCGGACCTGAAAACTAGATTGGTCAATGCCAAAGCTTCCACCAACTTGAAGCTCAAAACTTTCACTTTCTCCCTCAACTTTGACACCCTTCACCCCCCTTTTAGAAAAGCTAAACATATTTGTGTTTCAAATCCTGCCACTATCACCACCTCCTCCCTCAGCAACCACCACAACCCAAACTCTCATATTTGCCAACTATGCCTTCTTGGGAACTTGGACCGTGCCATGAGCTACTTAGACTCCATGCACGAGCTTCGAATTCCCGTTGAAGACGATTCTTACGTTGCCTTGATACGCTTCTGTGAGTGGAAGAGGGCAAGGAAAGAAGGGTCTCGTGTTTACTCATACGTTTCCATTTCCATGTCCCATTTGAGTCTTCAACTGGGGAATTCCTTTTTGAGCATGTTTGTGAGGTTTGGGAACTTGGTGGATGCTTGGTATGTTTTTGGGAGAATGGAGAAGAGGAACTTGTTCTCTTGGAATGTTTTGGTTGGTGGGTATGCTAAAGCTGGCTTCTTTGATGAAGCTTTGGACCTCTATCATAGAATGTTGTGGGTTGGTGTGAAACCTGATGTTTACACTTTCCCTTGTGTTTTGAGGACTTGTGGTGGCATGCCTAACTTGGTGAGGGGTAGAGAGATTCATGTTCATGTCATAAGTGTGATTACTGCATGTGAACTTCCGGGTGATGAGAGATTGGGAAGGCAAATTCATGGTTACATTCTCAGAACGGAGTTTGGGAAAGACCTTTCAATTCATAATTCATTAATTCTAATGTACTTATTTGTTGAACTTATTGAGGAAGCTGAAACAGTTTTCTCTCGAATGGAATGTAGAGATGTGGTATTGTGGACTGCAATGATATCAGGTTATGAGAATTGTTTGATGCCTCAGAAAGCTATTGAGACATTTAAAATGATGAATGCACAAAGTATCATGCCAGATGAAATCACCATAGCCATTGTACTCTCTGCTTGTTCTTGTTTATGCAATTTAGACATGGGGATGAACCTTCATGAGGTGGCCAAGCAGACAGGGCTCATCTCTTATGCTATAGTTGCAAACTCACTCATTGACATGTATGCCAAGTGTAAATGCATTGACAAGGCCTTGGAGAATAGGAGCTTTGACATGTGGAAAACAGATCCATGCCCATGCATTGAGAACTGGAGATATGCAGAACGTGGGAAAGGAGCACATGCTACCGAGCTTTTTCAGAGAATGGTAGAGTCAAACGTTAGTCCTAATGAAATTACATTTATCTCCATATTATGTGCTTGCAGCAGATCAGGTATGGTGGCAGAAGGCTTAGAATATTTTAACAGCATGAAGTATAAGTACTCTATTATGCCTAATCTGAAACATTATGCATGTGTGGTTGATTTACTTTGCCGTTCTGGGAAATTGGAGGAAGCTTATGAATTCATACAGAAAATGCCAATGAAACCAGATCTGGCAGTTTGGGGAGCTTTATTAAATGCATGTAGGATTCACCATAATGTTAAACTTGGAGAGCTTGCTGCAGAGAATATCTTTCAAGATGATACAACAAGTGTTGGATACTACATTCTTCTCTCTAATCTTTATGCTGACAATGGTAAATGGGACGAGGTTGCAGAAGTAAGAAAAATGATGAGACAGAATGGGCTCATTGTAGATCCTGGATGCAGCTGGGTGGAAGTCAAGGGTACggaaatcaatgctcttctggagcggttttgtaagaagatgaaggaagCTAGCGTTGAAGGGCCAGAAAGCAGTCATATGGACATAATGGAAGCTTCTAAGGCTGATATATTTTGTGGGCACAGTGAGAGACTGGCCATTGTCTTTGGACTTATTAATTCTGGCCCCGGGATGCCTATTTGGGTGACAAAGAATTTGTACATGTGCCAAAGTTGCCACAACATTGTCAAATTTATCTCTAGGGAGGTTCGCAGAGAGATTTCTGTAAGGGATGCTGAACAATTTCACCATTTCAAGGGAGGCATCTTCTCTTGCAAGGATGAAGGTTATAGGAGCTAG 3276 0.4432 MPSTTPTGSSSTSLFELLTEMKKQSYPESLTFQAKSPSQFSSECWFDDACILDMDYFVKTLSGIKAKGVRADLIGSIITHYASKWLPDLSAGDMAERGLTQFEESPESVTASWMKKRFFVETLVGVLPPEKDAIPCNFLLRLLRTANMVGVEGTYRQELEKRISWQLDQASLKELVIPSFSHTCGTLLDVELVIRLVKRFVSLDSEGAKSGASLVKVAKLVDSYLAEAAVDANLSLNDFFTLAAALPSHARATDDGLYRAIDTYLKAHSGVSKQERKGLCRLIDSRKLTPEASLHAAQNERFPVRAVIQVLLSEQSKLNRHVDWSGSLVSGTRSPGGLDLPTRCLSKREANAQQLEIKRLKEDVYRLQSQCSAMHAQMERMVEKKKGFFKWKKFAFGKSEHDKMEQELEGNGMYTPADLKTRLVNAKASTNLKLKTFTFSLNFDTLHPPFRKAKHICVSNPATITTSSLSNHHNPNSHICQLCLLGNLDRAMSYLDSMHELRIPVEDDSYVALIRFCEWKRARKEGSRVYSYVSISMSHLSLQLGNSFLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGFFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVISVITACELPGDERLGRQIHGYILRTEFGKDLSIHNSLILMYLFVELIEEAETVFSRMECRDVVLWTAMISGYENCLMPQKAIETFKMMNAQSIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQTGLISYAIVANSLIDMYAKCKCIDKALENRSFDMWKTDPCPCIENWRYAERGKGAHATELFQRMVESNVSPNEITFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLCRSGKLEEAYEFIQKMPMKPDLAVWGALLNACRIHHNVKLGELAAENIFQDDTTSVGYYILLSNLYADNGKWDEVAEVRKMMRQNGLIVDPGCSWVEVKGTEINALLERFCKKMKEASVEGPESSHMDIMEASKADIFCGHSERLAIVFGLINSGPGMPIWVTKNLYMCQSCHNIVKFISREVRREISVRDAEQFHHFKGGIFSCKDEGYRS 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01915 1091 Gene3D Tetratricopeptide repeat domain 635 797 IPR011990 GO:0005515
Gma08g01915 1091 Gene3D Tetratricopeptide repeat domain 802 1021 IPR011990 GO:0005515
Gma08g01915 1091 Gene3D Tetratricopeptide repeat domain 473 634 IPR011990 GO:0005515
Gma08g01915 1091 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 572 606 IPR002885 -
Gma08g01915 1091 Pfam PPR repeat 834 861 IPR002885 -
Gma08g01915 1091 Pfam PPR repeat 872 896 IPR002885 -
Gma08g01915 1091 Pfam PPR repeat 771 788 IPR002885 -
Gma08g01915 1091 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 868 898 IPR002885 -
Gma08g01915 1091 Coils Coil 350 370 - -
Gma08g01915 1091 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 696 730 IPR002885 -
Gma08g01915 1091 TIGRFAM PPR: pentatricopeptide repeat domain 834 861 IPR002885 -
Gma08g01915 1091 TIGRFAM PPR: pentatricopeptide repeat domain 574 608 IPR002885 -
Gma08g01915 1091 Pfam NPH3 family 44 293 IPR027356 -
Gma08g01915 1091 Pfam PPR repeat family 572 618 IPR002885 -
Gma08g01915 1091 Pfam PPR repeat family 695 742 IPR002885 -
Gma08g01915 1091 ProSiteProfiles NPH3 domain profile. 43 317 IPR027356 -
Gma08g01915 1091 PANTHER BNAC05G11880D PROTEIN 635 790 - -
Gma08g01915 1091 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 635 790 - -
Gma08g01915 1091 PANTHER BNAC05G11880D PROTEIN 427 635 - -
Gma08g01915 1091 PANTHER BNAC05G11880D PROTEIN 808 1062 - -
Gma08g01915 1091 Pfam E motif 914 976 IPR046848 -
Gma08g01915 1091 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 427 635 - -
Gma08g01915 1091 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 808 1062 - -
Gma08g01915 1091 Pfam DYW family of nucleic acid deaminases 1005 1086 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01915 Gma-Chr8 17217794 17224500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01915 486 912 Glycoside Hydrolase AT3G49170 26.966 5.91e-28 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01915 - - gmx:100777676 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01915 08 17217794 17224500 Gma08g01915 08 17217794 17224500 ECH
Gma07g00311 07 2651355 2653694 Gma08g01915 08 17217794 17224500 GST
Gma13g03240 13 46458388 46461104 Gma08g01915 08 17217794 17224500 PCT
Gma08g01915 08 17217794 17224500 Gma13g03240 13 46458388 46461104 PCT