Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03228 aaatcctacgaaaccaaacaatacaaaaagggcctcaaagcagccgataccattttgaaaaaatttcctgaccatggagaaactttatcaatgaagggtttgacattaaattgcatggatcgtaagtctgaggcatacgaactggttcgccaaggattgaagaatgaccttaaaagtcatgtttgctggcatgtttatggtctcctgtatcggtcagacagagaatatagggaagcaataaagtgttatcggaatgcactgaaaatagatcctgacaatattgaaatcttgcgggacctatcacttttacagGCTCAAATGCGAGACTTATCTGGCTTTGTTGAGACACGACAGCAACTTCTGACGCTCAAGTCAAATCATCGCATGAACTGGATTGGCTTTGCTGTTGCTCATCATTTGAACTCTAATGCATCAAAGGCTATTGAAATTCTGGAAGCGTATGAAGGGACATTGGAAGATGATTATCCTCCAGAAAATGAATGGTGTGAGCATGGGGAAATGCTTTTGTATAAGatctccttgctagaagaatgcagattttttcagaaagctcttgaggagttgcaaaagaaagagttaaaaattgttgataagcttgcatataaagaacaggaggttttacttctagttaagcttggccgcttagaagaaggggagaaattgtaccggacattactttccatgaatcctgacaattatagATATTATGAAGGCCTCCAAAAATGTGTTGGATTATATTCAAAAAATGGTCATTATTCTCCTGATGAAATAGATCGGTTAGATGCCTTGTACAAAACACTTGGGCAGCAATATAAGTGGTCTTCTGCTGTTAAGAGAATACCACTGGATTTTTTACAAGGTGACAAATTTCATGAAGCAGCAGATAATTATATTAGGCCTCTCCTAACTAAGGGAGTTCCATCTCTTTTCTCAGATCTTTCTTCGCTATACAATCAACTTGGGAAGGCAGACATTTTGGAACAGATCATTCTTGAGATAGAGAGTTCTATTAAGACCACTAGTCAATACCCTGGAGGGATGGAAAAAGAGCCACCTTCAACTCTTATGTGGACTTTGTTCTTGTTGGCTCAGCATTATGACAGACGGGGCCAATATGAAATTGCTCTTTTTAAAATCAATGAGGCTATTGATCACACACCTACCGTCATTGATCTGTATTCAGTCAAGAGTCGGATACTGAAGCATGCTGGTGATTTGGTTGCTGCTGCTGCATTTGCTGATGAAGCTAGGTGTATGGATCTTGCTGATCGTTATGTTAATAGTGAATGTGTTAAGCGCATGCTGCAGGCTGATCAGGTCGCTTTGGCAGAAAAAACTGCTGTGTTGTTCACAAAAGATGGTGATCAGCACAACAACCTACATGATATGCAGTGCATGTGGTATGAGCTTGCCTCTGCTGAAAGCCATTTTCGCCAAGGTAATCTTGGAATGGCTCTGAAGAAATTTCTGGCTGTTGAGAAGCATTATGCAGACATTACAGAAGATCAATTTGATTTTCATTCATACTGCTTAAGGAAAATGACGTTGCGTACATATGTTGAAATGCTTAAATTTCAAGACCAATTGCATTCACATGCATACTTTCATAAAGCAGCTGCTGGAGCTATCAGATGTTATATCAAATTGCATGATTCTCCCCCAAAGTCAACAGCCGAGGAAGATAATGACATGTCTAAGTTGCTTCCTTCTCAAAAAAAGAAAATGAGGCAAAAACAGAGAAAGGCAGAAGCAAGAGCTAAGAAAGAGGCAGAAGAAAAAAATGAAGAATCAAGTGCTGGTGGGATATCAAAGTCTGGGAAACGGCAGGCAAAACCCATTGATCCGGATCCACGTGGTGAAAAGTTGTTGCAGGTGGAAGATCCTTTGTTGGAAGGCACAAAATACTTGAAGCTGCTGCAGAAGAATTCACCAGATTCAGTGGAGACGCACTTTCTCTCTTTTGAATTATATATGAGAAAACAGAGGATTTTGCTTGCATTCCAGGCTGTGAAGCAGTTACTGAGGTTGGATGCTGAACACCCTGATTCTCATCGTTGCTTGATTAAATTCTTCAATAAAGTGGGATCCATGAATGCTCCTGTGACCGACAGTGAGAAACTCATTTGTAATGTCTTAGAAGCTGAGCGCCAAACTATTAGTCAGCTGCATGGGAAATCTCTGTTTGAGACAAATAACTCTTTCCTAGAAAAACATGAAGATTCTTTGACACACAGAGCTGCTTTTGGAGAAATGTTGTATATTTTGGATCCCAGCAGAAGGTCCGAGGCTGTCAAGTTGATTGAGGGGTCAGCAAATAATCTTGTGCCAAGAAATGGAGCGCTTGGACCAATCAGGGAATGGAAGCTTAAAGATTGTATTTCAGTTCATAAACTTCTTGCAACAGTTCTTGTCGATCAGGATGCTGCATCAAGATGGAAAATGCGTTGTGCTGAGCTTTTCCCATACTCCACATACTTTGAGGGAATTTGCAGCTCTGCCTCTCCCAACTCTGCCTTTAACCAGATACGTAAGAGCACTGAAACTGGGAGTTCTAACCATTGGGTGGGTGATCACAATGCGGAATCCACATCAAATGGCAAACTAGAGGCATTCAAAGATCTCACTATCTGA 2652 0.3337 KSYETKQYKKGLKAADTILKKFPDHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLSGFVETRQQLLTLKSNHRMNWIGFAVAHHLNSNASKAIEILEAYEGTLEDDYPPENEWCEHGEMLLYKISLLEECRFFQKALEELQKKELKIVDKLAYKEQEVLLLVKLGRLEEGEKLYRTLLSMNPDNYRYYEGLQKCVGLYSKNGHYSPDEIDRLDALYKTLGQQYKWSSAVKRIPLDFLQGDKFHEAADNYIRPLLTKGVPSLFSDLSSLYNQLGKADILEQIILEIESSIKTTSQYPGGMEKEPPSTLMWTLFLLAQHYDRRGQYEIALFKINEAIDHTPTVIDLYSVKSRILKHAGDLVAAAAFADEARCMDLADRYVNSECVKRMLQADQVALAEKTAVLFTKDGDQHNNLHDMQCMWYELASAESHFRQGNLGMALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRTYVEMLKFQDQLHSHAYFHKAAAGAIRCYIKLHDSPPKSTAEEDNDMSKLLPSQKKKMRQKQRKAEARAKKEAEEKNEESSAGGISKSGKRQAKPIDPDPRGEKLLQVEDPLLEGTKYLKLLQKNSPDSVETHFLSFELYMRKQRILLAFQAVKQLLRLDAEHPDSHRCLIKFFNKVGSMNAPVTDSEKLICNVLEAERQTISQLHGKSLFETNNSFLEKHEDSLTHRAAFGEMLYILDPSRRSEAVKLIEGSANNLVPRNGALGPIREWKLKDCISVHKLLATVLVDQDAASRWKMRCAELFPYSTYFEGICSSASPNSAFNQIRKSTETGSSNHWVGDHNAESTSNGKLEAFKDLTI 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03228 883 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 1 866 - -
Gma13g03228 883 Coils Coil 178 198 - -
Gma13g03228 883 MobiDBLite consensus disorder prediction 560 628 - -
Gma13g03228 883 Gene3D - 488 708 - -
Gma13g03228 883 ProSiteProfiles TPR repeat profile. 60 93 IPR019734 GO:0005515
Gma13g03228 883 SMART tpr_5 363 396 IPR019734 GO:0005515
Gma13g03228 883 SMART tpr_5 26 59 IPR019734 GO:0005515
Gma13g03228 883 SMART tpr_5 60 93 IPR019734 GO:0005515
Gma13g03228 883 Coils Coil 579 603 - -
Gma13g03228 883 SUPERFAMILY TPR-like 364 701 IPR011990 GO:0005515
Gma13g03228 883 MobiDBLite consensus disorder prediction 589 605 - -
Gma13g03228 883 Pfam TPR repeat 67 106 - -
Gma13g03228 883 Pfam N-terminal acetyltransferase A, auxiliary subunit 170 679 IPR021183 -
Gma13g03228 883 PANTHER BNAC02G23120D PROTEIN 1 866 - -
Gma13g03228 883 PIRSF NAT_A 1 801 IPR021183 -
Gma13g03228 883 Gene3D - 1 486 - -
Gma13g03228 883 SUPERFAMILY TPR-like 3 243 IPR011990 GO:0005515
Gma13g03228 883 SUPERFAMILY TPR-like 115 417 IPR011990 GO:0005515
Gma13g03228 883 MobiDBLite consensus disorder prediction 560 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03228 Gma-Chr13 46350029 46363230 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03228 K20792 - gmx:100818973 1706.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03228 13 46350029 46363230 Gma13g03228 13 46350029 46363230 ECH
Gma13g03228 13 46350029 46363230 Gma07g00322 07 2751567 2765368 PCT
Gma13g03228 13 46350029 46363230 Gma08g01902 08 17095155 17108693 PCT
Gma07g00322 07 2751567 2765368 Gma13g03228 13 46350029 46363230 PCT
Gma08g01902 08 17095155 17108693 Gma13g03228 13 46350029 46363230 PCT