Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03102 ATGATAGGAAAGAAATTCTTATGCGTTGTTGTAGCTGTGGCCTTTGTTATGATAACAAAGGTGCCCCAAAATGTGAGTGCTCAAAACTGTGGTTGTGCTGAAGGGTTATGTTGCAGCCAACATGGGTATTGTGGTAACGGTGAGGAGTACTGCGGCACAGGGTGCAAGCAGGGTCCTTGTTATTCGAGCACACCAAGTACTAACAATGTTAATGTGGCTGACATTGTCACACCACAATTCTTCAGTGGCATAATTGATCAGGCTGACTCTGGCTGTGCTGGCAAGAACTTTTACTCGCGAGATGCTTTTCTTAATGCTCTCAATTCCTATAATGACTTTGGTAGACTTGGTTCCGAGGATGACTCCAAGCGCGAGATTGCAGCTGCTTTTGCCCATTTCACACATGAAACTGGACATTTTTGTCACATTGAAGAGATTAATGGTGCATCGCAGGACTACTGCGACGAGAATACGATTTCACAGTATCCGTGCCTTTCTAACagaggttactatgggcgtggtccgatccaactaacatggaacttcaactatggacctgctggacagagcaacGATTTTGATGGATTGAACGCTCCTGAAACAGTGGGCAATGATCCTGTGATTTCTTTCAAGACAGCACTGTGGTACTGGATGCAACACGTGCGCCCTGTCATCAACCAAGGCTTTGGTGCAACCATCAGAGCCATTAACGGTCAACTTGAATGTGATGGTGCCAACCCTTCCACAGTTCAGGCTCGCGTTAATTACTACACTGACTACTGTAGACAATTCGGTGTTGCCACCGGTGATAATCTTACTTGCTAA 825 0.4145 MIGKKFLCVVVAVAFVMITKVPQNVSAQNCGCAEGLCCSQHGYCGNGEEYCGTGCKQGPCYSSTPSTNNVNVADIVTPQFFSGIIDQADSGCAGKNFYSRDAFLNALNSYNDFGRLGSEDDSKREIAAAFAHFTHETGHFCHIEEINGASQDYCDENTISQYPCLSNRGYYGRGPIQLTWNFNYGPAGQSNDFDGLNAPETVGNDPVISFKTALWYWMQHVRPVINQGFGATIRAINGQLECDGANPSTVQARVNYYTDYCRQFGVATGDNLTC 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03102 274 Gene3D - 24 72 IPR036861 GO:0008061
Gma13g03102 274 SMART ChitinBD_3 29 60 IPR001002 GO:0008061
Gma13g03102 274 Gene3D - 73 274 - -
Gma13g03102 274 CDD ChtBD1 32 60 - -
Gma13g03102 274 SUPERFAMILY Plant lectins/antimicrobial peptides 25 67 IPR036861 GO:0008061
Gma13g03102 274 ProSitePatterns Chitin recognition or binding domain signature. 32 51 IPR018371 GO:0008061
Gma13g03102 274 Pfam Chitin recognition protein 27 60 IPR001002 GO:0008061
Gma13g03102 274 ProSitePatterns Chitinases family 19 signature 2. 208 218 IPR000726 GO:0004568|GO:0006032|GO:0016998
Gma13g03102 274 ProSiteProfiles Chitin-binding type-1 domain profile. 27 62 IPR001002 GO:0008061
Gma13g03102 274 CDD chitinase_GH19 76 274 - -
Gma13g03102 274 PANTHER CHITINASE-RELATED 11 274 - -
Gma13g03102 274 PANTHER ENDOCHITINASE EP3 11 274 - -
Gma13g03102 274 SUPERFAMILY Lysozyme-like 71 274 IPR023346 -
Gma13g03102 274 PIRSF Endochitinase 1 274 IPR016283 GO:0004568|GO:0005975
Gma13g03102 274 ProSitePatterns Chitinases family 19 signature 1. 92 114 IPR000726 GO:0004568|GO:0006032|GO:0016998
Gma13g03102 274 Pfam Chitinase class I 76 220 IPR000726 GO:0004568|GO:0006032|GO:0016998
Gma13g03102 274 Pfam Chitinase class I 227 274 IPR000726 GO:0004568|GO:0006032|GO:0016998
Gma13g03102 274 Gene3D Endochitinase, domain 2 144 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03102 Gma-Chr13 45255849 45257040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03102 12 274 Glycoside Hydrolase AT3G54420 70.037 4.33e-137 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03102 K01183 - gmx:100776582 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03102 13 45255849 45257040 Gma13g03102 13 45255849 45257040 ECH
Gma13g03102 13 45255849 45257040 Gma12g00441 12 3598327 3600089 PCT
Gma13g03102 13 45255849 45257040 Gma11g01139 11 9596047 9597659 PCT
Gma12g00441 12 3598327 3600089 Gma13g03102 13 45255849 45257040 PCT
Gma11g01139 11 9596047 9597659 Gma13g03102 13 45255849 45257040 PCT