Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00441 ATGATGATGATGGGGAACAATGTGCATAGCATTGGTGTCATAGGAGTGATGGTGAGTGGCTTAGTGTTGATGATGGTGTCAAAAGGTGTGAGTGTGAGAGCTCAAAACTGTGGGTGTGAGGCAGAGTTATGTTGCAGCAAATACGGGTATTGTGGGAGTGGTGATGACTACTGTGGCAAAGGATGCAAAGAGGGTCCTTGCTATGGCACTGCCACACCCAACGACGATGTTTCCGTGGCCGACATCGTCACTTCCGAGTTCTTCAACGCCATAATCGATCAAGCAGAAGACCATTGTGCTGGCAAGAATTTCTACTCACGAGATGCCTTCCTTGATGCTCTCATTGCCTACGACCAGTTTGCTAAGACTGGTTCTGTTGATGACTCCAAGCGTGAAATTGCAGCTGCTTTTGCTCATTTCACCTACCAATCTCGACATTTTTGCTACATAGAAGAGATTGAAGGTGCATCAAAGGACTACTGTGACAAAACCAACCGCCATTACCCGTGTGCCCATAACAAAGGTTACTATGGACGTGGACCCATCCAACTATCATGGAACTTCAACTACGGGCCAGCAGGGGAGAACAATGGTTTTGATGGATTGAACGCTCCAGAGACAGTGGCCAGTGACCCTGTTATATCCTTCAAGACGGCGTTGTGGTACTGGACACAGAATGTGAGCCCTGTGATGAAGCATGGTTTTGGTGCAACCATTAGAGCTATCAATGGTCATCTTGAATGTGATGGAGCAAACCCTGAAACTGTTCAGGCTAGGGTCAATTACTATACTGAATATTGTTCACAGCTTGATGTTGCTCCGGGAGATAACCTCACTTGCTAA 843 0.4686 MMMMGNNVHSIGVIGVMVSGLVLMMVSKGVSVRAQNCGCEAELCCSKYGYCGSGDDYCGKGCKEGPCYGTATPNDDVSVADIVTSEFFNAIIDQAEDHCAGKNFYSRDAFLDALIAYDQFAKTGSVDDSKREIAAAFAHFTYQSRHFCYIEEIEGASKDYCDKTNRHYPCAHNKGYYGRGPIQLSWNFNYGPAGENNGFDGLNAPETVASDPVISFKTALWYWTQNVSPVMKHGFGATIRAINGHLECDGANPETVQARVNYYTEYCSQLDVAPGDNLTC 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00441 280 ProSiteProfiles Chitin-binding type-1 domain profile. 34 69 IPR001002 GO:0008061
Gma12g00441 280 Gene3D - 79 280 - -
Gma12g00441 280 Pfam Chitinase class I 232 280 IPR000726 GO:0004568|GO:0006032|GO:0016998
Gma12g00441 280 Pfam Chitinase class I 82 228 IPR000726 GO:0004568|GO:0006032|GO:0016998
Gma12g00441 280 Gene3D Endochitinase, domain 2 151 208 - -
Gma12g00441 280 PANTHER ENDOCHITINASE EP3 21 280 - -
Gma12g00441 280 SMART ChitinBD_3 36 67 IPR001002 GO:0008061
Gma12g00441 280 PIRSF Endochitinase 3 280 IPR016283 GO:0004568|GO:0005975
Gma12g00441 280 ProSitePatterns Chitinases family 19 signature 1. 99 121 IPR000726 GO:0004568|GO:0006032|GO:0016998
Gma12g00441 280 PANTHER CHITINASE-RELATED 21 280 - -
Gma12g00441 280 SUPERFAMILY Lysozyme-like 78 280 IPR023346 -
Gma12g00441 280 CDD chitinase_GH19 83 280 - -
Gma12g00441 280 SUPERFAMILY Plant lectins/antimicrobial peptides 33 72 IPR036861 GO:0008061
Gma12g00441 280 ProSitePatterns Chitin recognition or binding domain signature. 39 58 IPR018371 GO:0008061
Gma12g00441 280 Gene3D - 30 78 IPR036861 GO:0008061
Gma12g00441 280 Pfam Chitin recognition protein 35 67 IPR001002 GO:0008061
Gma12g00441 280 CDD ChtBD1 39 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00441 Gma-Chr12 3598327 3600089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00441 2 280 Glycoside Hydrolase AT3G54420 65.233 3.78e-135 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00441 K01183 - gmx:100778526 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00441 12 3598327 3600089 Gma12g00441 12 3598327 3600089 ECH
Gma12g00441 12 3598327 3600089 Gma11g01139 11 9596047 9597659 GST
Gma13g03102 13 45255849 45257040 Gma12g00441 12 3598327 3600089 PCT
Gma12g00441 12 3598327 3600089 Gma13g03102 13 45255849 45257040 PCT