Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03100 ATGAAGAACGACCACAACAACAACGCCGAACACAACAAAGACACTACCGTTGGAATCCTAGATTCCCGATTCAACCAGACCCTCAGAAATGTTCAAGGGTTACTCAAGGGTCGTAACATTCCTGGTAAAATATTATTAAGCCAGAGGGTTGAATCTCCAGATTACACAAGCTTATCCTCACCAACTTATATAAGGAGCTCCTCATACAGTGAAACTGGCACAAGTGACCAGACATCTGAGACAGTAGAGGAGGAAGTTCACAGTACAAGTAAACCATTTGGTATTCCCAATGAGAATAAGTTGAAAATATCAGCATCCAATGTAGAGAGCTCATCTGAAGAACTCCGGAAATCTTCCATGGGTGCAAGAGCTACAGATTCTGCAAGAGTTATGAAGTTCACTAAGGTGCTTTCAGAGACAATGGTTAAATTAGAGAAATTGCGTGAATTTTCTTGGAGGGGTGTTCCAGATTATATGCGTCCTACAGTGTGGAGACTTCTCTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGAGTTTTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTattatgatattcctgatacagaacgctcagatgatgagatcaatatgcttcgccagattgctgttgattgtccaagaactgtgcctgaagtttcattctttcaacaacagcaagttcagaaatcattggagcgtattctgtacacatgggcaattcgacatcctgcaagtggatatgttcaggggataaatgatcttgttacgccatttttagttgttttcctatcagaatacttggaagggggcatagataattggtcaatgtctgatttatcttcagatgaaatctctaatgtagaggctgactgctattggtgcttgtcaaagttgCTTGACAGTATGCAAGACCATTATACATTTGCTCAACCAGGAATTCAAAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGACGATCCTGTTTCAAACCATATGGAGGAGCAAGGATTGGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTAATCCGCGAGATACCCTTCCATCTTGTCACTCGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAACGTGGTCTGACAATCTCCAGAAGCTTGATTTCCAAGAGTTGGTAATGTTCCTTCAACACCTTCCAACTAAGAACTGGACTGACCAGGAGCTCGAGATGGTACTTTCTCGTGCATTTATGTGGCACAGCATGTTCAACAACTCTCCGAGTCATTTAGCTAACTGA 1356 0.3215 MKNDHNNNAEHNKDTTVGILDSRFNQTLRNVQGLLKGRNIPGKILLSQRVESPDYTSLSSPTYIRSSSYSETGTSDQTSETVEEEVHSTSKPFGIPNENKLKISASNVESSSEELRKSSMGARATDSARVMKFTKVLSETMVKLEKLREFSWRGVPDYMRPTVWRLLLGYAPPNSDRREGVLKRKRLEYLDCVSQYYDIPDTERSDDEINMLRQIAVDCPRTVPEVSFFQQQQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGGIDNWSMSDLSSDEISNVEADCYWCLSKLLDSMQDHYTFAQPGIQRLVFKLKELVRRIDDPVSNHMEEQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAEGDALPDFLVYISASFLLTWSDNLQKLDFQELVMFLQHLPTKNWTDQELEMVLSRAFMWHSMFNNSPSHLAN 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03100 451 Pfam Rab-GTPase-TBC domain 158 401 IPR000195 -
Gma13g03100 451 MobiDBLite consensus disorder prediction 54 80 - -
Gma13g03100 451 Gene3D - 316 451 - -
Gma13g03100 451 ProSiteProfiles TBC/rab GAP domain profile. 154 381 IPR000195 -
Gma13g03100 451 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 2 448 - -
Gma13g03100 451 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 317 439 IPR035969 -
Gma13g03100 451 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 2 448 - -
Gma13g03100 451 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 131 341 IPR035969 -
Gma13g03100 451 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 190 315 - -
Gma13g03100 451 MobiDBLite consensus disorder prediction 54 79 - -
Gma13g03100 451 SMART tbc_4 151 407 IPR000195 -
Gma13g03100 451 Gene3D - 131 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03100 Gma-Chr13 45246493 45251289 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03100 K20360 - gmx:100776049 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03100 13 45246493 45251289 Gma13g03100 13 45246493 45251289 ECH
Gma13g03100 13 45246493 45251289 Gma15g00264 15 2274420 2280221 GST
Gma13g03100 13 45246493 45251289 Gma12g00445 12 3617164 3623017 PCT
Gma13g03100 13 45246493 45251289 Gma11g01143 11 9616023 9621603 PCT
Gma12g00445 12 3617164 3623017 Gma13g03100 13 45246493 45251289 PCT
Gma11g01143 11 9616023 9621603 Gma13g03100 13 45246493 45251289 PCT