Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01143 ATGAACAAGCGCCAAGAAGATTTGCGCAACATAGCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGGGTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGGGTAGATCCTCCCGATAACTCAAACTCGAAGATATCCTCACCAAATTACAAAAGGAGCTTTTCTCACAATGATGCTGGTACAAGTGATAACACATCTGGGGCAGTAGAGGAGGAGTTTCAGAGTAAAAGCAAACCAATTAGTATTGCCAATGCCAATAAGCTAAAAGTGTCGACCTCCCTTGGAGGGAGCCCACCCGAAGAATTCCACAAGTCTACCATGGGTGCTAGAGCTACAGATTCTGCAAGAATTATGAAGTTCACCAAGGTGCTTTCTGGGACGGTGGTTATATTAGACAAGTTGCGGGAATTAGCTTGGAGTGGTGTTCCAGACAATATGCGTCCTAAAGTGTGGAGACTTCTGTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGAGTTCTAAGAAGGAAGCGCCTTGAGTATCTTGACTGTATTTCTCAGTattatgatattcctgatacagaacgttcagatgatgaggtcaacatgcttcatcagattggtattgattgtccaagaactgttcctgatgttccattcttccagcagcagcaagttcagaaatcattggaacgtattctttatgcatgggccattcgacatcctgcaagtggatatgttcaggggataaatgatcttgttacgccatttttggttgttttcttatcagaacattttgaaggggatatcgataattggtcaatgtctgatttatcttcagatataatctctaatatagaggctgactgctactggtgcttgtcaaagttgCTTGATGGTATGCAAGACCATTACACATTCGCTCAACCTGGAATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGATGAGCCTGTTTCACGGCACATTGAGGATCAGGGACTTGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAGATACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAACGTGGTCAGACAAGCTCCAGAAACTTCATTTCCAAGAATTGGTAATGTTCCTTCAACACCTTCCAACAGAGAACTGGACTCACCGGGAGCTTGAGATGGTGCTTTCCCGAGCATTTATGTGGCACACCATGTTCAACAACTCTCCTAGCCATTTAGCTAGCTGA 1347 0.337 MNKRQEDLRNIATTLDSRFNQTLRNVQGLLKGRSIPGKILLSRRVDPPDNSNSKISSPNYKRSFSHNDAGTSDNTSGAVEEEFQSKSKPISIANANKLKVSTSLGGSPPEEFHKSTMGARATDSARIMKFTKVLSGTVVILDKLRELAWSGVPDNMRPKVWRLLLGYAPPNSDRREGVLRRKRLEYLDCISQYYDIPDTERSDDEVNMLHQIGIDCPRTVPDVPFFQQQQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFLSEHFEGDIDNWSMSDLSSDIISNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHIEDQGLEFLQFAFRWFNCLLIREIPFHLITRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLHFQELVMFLQHLPTENWTHRELEMVLSRAFMWHTMFNNSPSHLAS 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01143 448 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 4 445 - -
Gma11g01143 448 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 188 312 - -
Gma11g01143 448 ProSiteProfiles TBC/rab GAP domain profile. 151 378 IPR000195 -
Gma11g01143 448 Gene3D - 313 448 - -
Gma11g01143 448 PANTHER GTPASE-ACTIVATING PROTEIN GYP1-LIKE 4 445 - -
Gma11g01143 448 SMART tbc_4 148 404 IPR000195 -
Gma11g01143 448 MobiDBLite consensus disorder prediction 46 84 - -
Gma11g01143 448 Pfam Rab-GTPase-TBC domain 154 399 IPR000195 -
Gma11g01143 448 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 314 436 IPR035969 -
Gma11g01143 448 Gene3D - 128 177 - -
Gma11g01143 448 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 128 338 IPR035969 -
Gma11g01143 448 MobiDBLite consensus disorder prediction 41 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01143 Gma-Chr11 9616023 9621603 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01143 K20360 - gmx:100819281 900.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01143 11 9616023 9621603 Gma11g01143 11 9616023 9621603 ECH
Gma12g00445 12 3617164 3623017 Gma11g01143 11 9616023 9621603 GST
Gma13g03100 13 45246493 45251289 Gma11g01143 11 9616023 9621603 PCT
Gma15g00264 15 2274420 2280221 Gma11g01143 11 9616023 9621603 PCT
Gma11g01143 11 9616023 9621603 Gma13g03100 13 45246493 45251289 PCT
Gma11g01143 11 9616023 9621603 Gma15g00264 15 2274420 2280221 PCT