Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02991 ATGGGTCAGAGCCTGAGTTGCAGTGGCAACCATGACCACGGCCTCTTCACCGCCGTGCTGCACGGCGACCTTCAAATTGTCACAACTCTCTTGGATTCCGACCCTTCTCTCTTGCACCAAACAACTCTCTACGATCGCCACTCTCCTCTTCATATTGCTGCAGCCAATGGCCAGATCGAGATTCTGTCTAGGCTCTTAGATGGATCTCTTAACCCAGATGTTTTAAATCGCCACAAACAGACTCCGCTTATGTTGGCAGCAATGCACGGGAACATCGCCTGTGTGGAGAAGCTTCTTCAAGCCGGAGCTAATGTTTTGATGTTTGATACTATTTACGGGAGAACCTGCTTACACTATTCCGCTTACTACGGCCATTCTTCTTGCCTTAAGGCTATTCTTTCCGCTGCTCAATCTAGTCCAGTGGCTGCTTCTTGGGGGTTTGCTCGGTTTGTGAATATTAGAGATGGAAAAGGTGCAACGCCATTGCACTTGGCGGCTCGTCAGAGGCGGTCTGAATGTGTACATATTCTATTAGACAGTGGAGCTCTTGTTTGTGCTTCAACTGGTGGATATGGCTGTCCTGGGAGCACTCCTCTTCATCTAGCAGCTAGAGGAGGATCTCTGGATTGCATTCGTGAATTGTTGGCATGGGGTGCAGATCGTCTTCAACGCGATGCATCTGGGCGTATACCATATATGGTTGCCCTTAAACACAAACATGGAGCCTGTGCATCATTGCTAAATCCTACATCTGCAGAACCTCTTGTCTGGCCGTCTCCATTGAAGTTCATCAGTGAGCTTAATCCTGAAGCCAAAGCTTTATTAGAGCAGGCCTTGATGGATGCAAACAGAGAAAGAGAGAAAAACATATTGAAAGGGAGTTCTTACTCTCTGCCATCTCCATCTCATTCTGATGGGGTAGCTGATAATACGTCTGAGGTTAGTGAATCCGAATTATGTTGCATCTGCTTTGAGCAGGTGTGCACAATTGAAGTTCAGAACTGTGGCCACCAGATGTGTGCACAATGCACACTAGCCCTGTGTTGCCACAACAAGCCCAACCCTGCCACTGCCTGTCTTACTCCACCAGTTTGTCCATTTTGTCGAAGCACCATAACAAGACTTGTTGTTGTGAAGACGGAATGCCACGATGAAACTGATCAAGACAGTGTTGATATCAACTGTTCCAAGCTGAGCAAGTCATCAAGGAAACTCAGAAACTTGAATGACATTGGTAGCAGCAGCTTCAAGGGACTATCTAGTGTTAGTTCATTCGGGAAATTGGGTAGCCGCAGCTCTGGAAGGATTGCTGCAGAGTGGCTTGATAAACAGTGA 1335 0.4734 MGQSLSCSGNHDHGLFTAVLHGDLQIVTTLLDSDPSLLHQTTLYDRHSPLHIAAANGQIEILSRLLDGSLNPDVLNRHKQTPLMLAAMHGNIACVEKLLQAGANVLMFDTIYGRTCLHYSAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGKGATPLHLAARQRRSECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRLQRDASGRIPYMVALKHKHGACASLLNPTSAEPLVWPSPLKFISELNPEAKALLEQALMDANREREKNILKGSSYSLPSPSHSDGVADNTSEVSESELCCICFEQVCTIEVQNCGHQMCAQCTLALCCHNKPNPATACLTPPVCPFCRSTITRLVVVKTECHDETDQDSVDINCSKLSKSSRKLRNLNDIGSSSFKGLSSVSSFGKLGSRSSGRIAAEWLDKQ 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02991 444 SMART ANK_2a 157 186 IPR002110 GO:0005515
Gma13g02991 444 SMART ANK_2a 194 223 IPR002110 GO:0005515
Gma13g02991 444 SMART ANK_2a 45 74 IPR002110 GO:0005515
Gma13g02991 444 SMART ANK_2a 227 256 IPR002110 GO:0005515
Gma13g02991 444 SMART ANK_2a 112 142 IPR002110 GO:0005515
Gma13g02991 444 SMART ANK_2a 10 39 IPR002110 GO:0005515
Gma13g02991 444 SMART ANK_2a 78 107 IPR002110 GO:0005515
Gma13g02991 444 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Gma13g02991 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 378 IPR013083 -
Gma13g02991 444 Gene3D - 147 197 IPR036770 -
Gma13g02991 444 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Gma13g02991 444 Gene3D - 9 146 IPR036770 -
Gma13g02991 444 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Gma13g02991 444 SUPERFAMILY Ankyrin repeat 10 250 IPR036770 -
Gma13g02991 444 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Gma13g02991 444 Gene3D - 198 251 IPR036770 -
Gma13g02991 444 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Gma13g02991 444 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Gma13g02991 444 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Gma13g02991 444 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Gma13g02991 444 Pfam Ankyrin repeats (3 copies) 112 183 IPR002110 GO:0005515
Gma13g02991 444 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 444 - -
Gma13g02991 444 PANTHER HOMEOBOX PROTEIN WARIAI 1 444 - -
Gma13g02991 444 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Gma13g02991 444 SUPERFAMILY RING/U-box 313 375 - -
Gma13g02991 444 Pfam Ankyrin repeats (many copies) 195 234 IPR002110 GO:0005515
Gma13g02991 444 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02991 Gma-Chr13 44424112 44427480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02991 12 211 Miscellaneous Gene Families AT5G02620 29.126 4.09e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02991 - - gmx:100786708 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02991 13 44424112 44427480 Gma13g02991 13 44424112 44427480 ECH
Gma13g02991 13 44424112 44427480 Gma15g00374 15 3150826 3154693 GST
Gma13g02991 13 44424112 44427480 Gma12g00565 12 4733522 4737015 PCT
Gma13g02991 13 44424112 44427480 Gma11g01268 11 10808940 10812090 PCT
Gma12g00565 12 4733522 4737015 Gma13g02991 13 44424112 44427480 PCT
Gma11g01268 11 10808940 10812090 Gma13g02991 13 44424112 44427480 PCT