Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma11g01268 | ATGGGTCAGGGGCTGAGTTGCAGAGGGAGCCATGAGCATGGCCTATTCCGTGCTGTGCAGCATGGGGACCTAGACACTGTTGCAGCTTTGCTACAAACACACCCTTCTCTTATGAACCACACCACTGTCTATGATCACCACTCTCCTCTTCATATTGCCGCTGCTAATGGCCAGATCCAGGTTTTATCTTGGCTTTTGGATGGATCTGTGAATCCAGATGTGTTGAATCGCCAAAAGCAGACACCGCTTATGTTGGCTGCAATGCACGGAAAGATCGCCTGTGTGGAAAAGCTCCTTGAAGCCGGTGCAAATGTACTAATGTTTGATGCTTGTTACGGAAGAACCTGCTTGCACTATGCAGCTTATTATGGTCATTCTTCTTGTCTTAAGGCAATTCTTTCTGCCGCTCAATCTAGTCCAGTGGCTGCTTCTTGGGGGTTTGCTCGGTTTGTGAATATTAGAGATGGTAGAGGTGCAACACCTTTGCATTTAGCAGCTCGTCAAAGACGGCCTGAATGTGTACATATTCTATTGTACAGTGGAGCTCTTGTTTCTGCTTCAACTGGAAGATATGGATGTCCTGGGAGCACTCCTCTTCATCTTGCAGCCAAAGGGGGATCTTTGGATTGCATCCGGGAACTATTGGCATGGGGTGCAGATCGCCTTCAACGTGATGCTTCTGGGCGAATACCGTATGTAGTTGCTCTGAAACACAGACATGGAGCATGTGCAGCATTGCTGAATCTTTCGTCTGCTGAGCCTCTTGTATGGCCATCATCTTTGAAGATAATCAGTGAGCTTAATCCAGACGCCAAAGAGTTATTAGAGCGGGCCCTGATGGATGCAAACAGGGAAAGGGAGAAAAACATATTGAAAGGGAGTGATTACTCTCTTCCATCTCCATCACATTCTGATGGGGTAGATGACAATATCTCTGAGGTTAGTGAGACAGAATTATGCTGCATCTGCTTTGAGCAAGTGTGTACAATTGAAGTCCAAGACTGTGGTCACCAGATGTGTGCACAATGCACACTAGCCCTGTGTTGTCACAACAAGCCTAACCCTTGTACTTCACGTGTTATCCCGCCAGTTTGTCCATTCTGCAGAAGCACCATAGCAAGATTGGTAGTTGTAAAAAAAGAAAGCCCTGATGACATTGATCAAGATGGTGTTGATATCACTTGTTCCAAGCATAGCAAGTCAAGGAAATCACGAAACTCAAACGAGGGTGGTAGCAGCAGCATTAAGGGATTATCAAATGTGAACTCATTTGGAAAAATGGGTGGTCGCAGCTCTGGAAAAATTGCTGCTGAAAATGAGTGGGAAGATGATAAACAACAGTGA | 1344 | 0.4591 | MGQGLSCRGSHEHGLFRAVQHGDLDTVAALLQTHPSLMNHTTVYDHHSPLHIAAANGQIQVLSWLLDGSVNPDVLNRQKQTPLMLAAMHGKIACVEKLLEAGANVLMFDACYGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARQRRPECVHILLYSGALVSASTGRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHRHGACAALLNLSSAEPLVWPSSLKIISELNPDAKELLERALMDANREREKNILKGSDYSLPSPSHSDGVDDNISEVSETELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPCTSRVIPPVCPFCRSTIARLVVVKKESPDDIDQDGVDITCSKHSKSRKSRNSNEGGSSSIKGLSNVNSFGKMGGRSSGKIAAENEWEDDKQQ | 447 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma11g01268 | 447 | MobiDBLite | consensus disorder prediction | 397 | 447 | - | - | |
| Gma11g01268 | 447 | ProSiteProfiles | Ankyrin repeat profile. | 78 | 110 | IPR002110 | GO:0005515 | |
| Gma11g01268 | 447 | MobiDBLite | consensus disorder prediction | 406 | 427 | - | - | |
| Gma11g01268 | 447 | Gene3D | - | 9 | 144 | IPR036770 | - | |
| Gma11g01268 | 447 | ProSiteProfiles | Ankyrin repeat region circular profile. | 78 | 105 | - | - | |
| Gma11g01268 | 447 | ProSiteProfiles | Ankyrin repeat profile. | 157 | 189 | IPR002110 | GO:0005515 | |
| Gma11g01268 | 447 | ProSiteProfiles | Ankyrin repeat region circular profile. | 157 | 182 | - | - | |
| Gma11g01268 | 447 | Pfam | Ankyrin repeats (many copies) | 194 | 232 | IPR002110 | GO:0005515 | |
| Gma11g01268 | 447 | ProSiteProfiles | Ankyrin repeat region circular profile. | 45 | 77 | - | - | |
| Gma11g01268 | 447 | SMART | ANK_2a | 112 | 142 | IPR002110 | GO:0005515 | |
| Gma11g01268 | 447 | SMART | ANK_2a | 194 | 223 | IPR002110 | GO:0005515 | |
| Gma11g01268 | 447 | SMART | ANK_2a | 10 | 39 | IPR002110 | GO:0005515 | |
| Gma11g01268 | 447 | SMART | ANK_2a | 157 | 186 | IPR002110 | GO:0005515 | |
| Gma11g01268 | 447 | SMART | ANK_2a | 78 | 107 | IPR002110 | GO:0005515 | |
| Gma11g01268 | 447 | SMART | ANK_2a | 45 | 74 | IPR002110 | GO:0005515 | |
| Gma11g01268 | 447 | PANTHER | UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED | 1 | 442 | - | - | |
| Gma11g01268 | 447 | ProSiteProfiles | Zinc finger RING-type profile. | 320 | 369 | IPR001841 | - | |
| Gma11g01268 | 447 | Gene3D | - | 145 | 197 | IPR036770 | - | |
| Gma11g01268 | 447 | SUPERFAMILY | RING/U-box | 313 | 374 | - | - | |
| Gma11g01268 | 447 | ProSiteProfiles | Ankyrin repeat profile. | 194 | 226 | IPR002110 | GO:0005515 | |
| Gma11g01268 | 447 | SUPERFAMILY | Ankyrin repeat | 15 | 247 | IPR036770 | - | |
| Gma11g01268 | 447 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 303 | 385 | IPR013083 | - | |
| Gma11g01268 | 447 | Pfam | Ankyrin repeats (3 copies) | 112 | 184 | IPR002110 | GO:0005515 | |
| Gma11g01268 | 447 | Pfam | Ankyrin repeats (3 copies) | 15 | 109 | IPR002110 | GO:0005515 | |
| Gma11g01268 | 447 | ProSiteProfiles | Ankyrin repeat region circular profile. | 194 | 220 | - | - | |
| Gma11g01268 | 447 | PANTHER | HOMEOBOX PROTEIN WARIAI | 1 | 442 | - | - | |
| Gma11g01268 | 447 | ProSiteProfiles | Ankyrin repeat profile. | 45 | 77 | IPR002110 | GO:0005515 | |
| Gma11g01268 | 447 | Gene3D | - | 198 | 251 | IPR036770 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma11g01268 | Gma-Chr11 | 10808940 | 10812090 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma11g01268 | 12 | 330 | Miscellaneous Gene Families | AT5G60070 | 27.300 | 7.28e-19 | 87.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma11g01268 | - | - | gmx:100800611 | 910.598 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma11g01268 | 11 | 10808940 | 10812090 | Gma11g01268 | 11 | 10808940 | 10812090 | ECH | |
| Gma12g00565 | 12 | 4733522 | 4737015 | Gma11g01268 | 11 | 10808940 | 10812090 | GST | |
| Gma13g02991 | 13 | 44424112 | 44427480 | Gma11g01268 | 11 | 10808940 | 10812090 | PCT | |
| Gma15g00374 | 15 | 3150826 | 3154693 | Gma11g01268 | 11 | 10808940 | 10812090 | PCT | |
| Gma11g01268 | 11 | 10808940 | 10812090 | Gma13g02991 | 13 | 44424112 | 44427480 | PCT | |
| Gma11g01268 | 11 | 10808940 | 10812090 | Gma15g00374 | 15 | 3150826 | 3154693 | PCT |