Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00565 ATGGGTCAGGGGCTGAGTTGCAGAGGGAGCCATGAGCATGGCCTATTCCGTGCTGTGCAGCATGGGGACCTAGACACTGTCGCAGCTTTGCTACAAACACACCCTTCTCTTTTGAACCACACCACTGTCTATGATCACCACTCTCCTCTTCATATTGCCGCTGCTAATGGCCAGATCCAGGTTTTGTCTTGGCTTTTGGATGGATCTGTGAATCCAGATGTGTTGAATCGCCAAAAGCAGACACCGCTTATGTTGGCTGCAATGCACGGAAAGATCGCCTGTGTGGAAAAGCTCCTTGAAGCTGGTGCTAATGTATTAATGTTTGATGCTTGTTACGGAAGAACCTGTTTGCACTATGCAGCTTACTATGGCCATTCTTCTTGCCTTAAGGCAATTCTTTCTGCAGCTCAATCTAGTCCAGTGGCTGCTTCTTGGGGTTTTGCTCGGTTTGTGAATATTAGAGATGGTAGACGTGCAACACCATTGCATTTGGCAGCTCGTCAAAGACGGCCTGAATGTGTACATATTCTATTGTACAGTGGAGCTCTTGTTTCTGCTTCAACCGGAAGATATGGATGTCCTGGGAGCACTCCTCTTCATCTGGCAGCCAAAGGGGGATCTTTGGATTGCATCCGGGAACTATTGGCATGGGGTGCAGATCGCCTTCAACGTGATGCCTCTGGGCGAATACCATATGTAGTTGCTCTGAAACACAGACATGGCGCATGTGCAACATTGCTGAATCTTTCATCTGCTGAGTCTCTTGTATGGCCATCATCTTTGAAGATAATCAGTGAGCTTAATCCAAACGCCAAAGAGTTATTAGAGCGGGCCCTGATGGATGCAAACAGGGAAAGAGAGAAGAACATATTGAAAGGGAGTGATTACTCTCTTCCATCTCCATCACATTCTGATGGGGTAGATGACAATATCTCCGAGGTTAGTGAGACGGAATTATGCTGCATCTGCTTTGAGCAAGTGTGTACAATTGAAGTCCAAGACTGTGGTCACCAGATGTGTGCACAATGCACACTAGCCCTGTGTTGTCACAACAAGCCCAACCCTTCTACTTCTCGTGTTATCCCACCAGTTTGTCCATTCTGCCGAAGCAGCATAGCAAGATTAGTAGTTGTAAAAAACGAAAGCCCTGATGACATTAATCAAGATGGTGTTGATATCACTTGTTCCAAGCCTAGCAAGTCAAGGAAATTGCGAAACTTGAACGAGGACGGTAGCAGCAGCATCAAGGGATTATCAAATGTGAACTCATTTGGAAAAATGGGTGGTCGCAGCTCTGGAAAAATTGCTGCTGAAAATGAGTGGGAAGATGATAAACAACAGTGA 1344 0.4621 MGQGLSCRGSHEHGLFRAVQHGDLDTVAALLQTHPSLLNHTTVYDHHSPLHIAAANGQIQVLSWLLDGSVNPDVLNRQKQTPLMLAAMHGKIACVEKLLEAGANVLMFDACYGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGRRATPLHLAARQRRPECVHILLYSGALVSASTGRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHRHGACATLLNLSSAESLVWPSSLKIISELNPNAKELLERALMDANREREKNILKGSDYSLPSPSHSDGVDDNISEVSETELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPSTSRVIPPVCPFCRSSIARLVVVKNESPDDINQDGVDITCSKPSKSRKLRNLNEDGSSSIKGLSNVNSFGKMGGRSSGKIAAENEWEDDKQQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00565 447 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Gma12g00565 447 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Gma12g00565 447 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Gma12g00565 447 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Gma12g00565 447 Gene3D - 9 146 IPR036770 -
Gma12g00565 447 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Gma12g00565 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 386 IPR013083 -
Gma12g00565 447 SUPERFAMILY Ankyrin repeat 15 247 IPR036770 -
Gma12g00565 447 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Gma12g00565 447 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Gma12g00565 447 PANTHER HOMEOBOX PROTEIN WARIAI 1 442 - -
Gma12g00565 447 Gene3D - 148 197 IPR036770 -
Gma12g00565 447 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 442 - -
Gma12g00565 447 SUPERFAMILY RING/U-box 313 374 - -
Gma12g00565 447 MobiDBLite consensus disorder prediction 404 447 - -
Gma12g00565 447 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Gma12g00565 447 MobiDBLite consensus disorder prediction 410 427 - -
Gma12g00565 447 Pfam Ankyrin repeats (many copies) 194 232 IPR002110 GO:0005515
Gma12g00565 447 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Gma12g00565 447 SMART ANK_2a 45 74 IPR002110 GO:0005515
Gma12g00565 447 SMART ANK_2a 194 223 IPR002110 GO:0005515
Gma12g00565 447 SMART ANK_2a 78 107 IPR002110 GO:0005515
Gma12g00565 447 SMART ANK_2a 112 142 IPR002110 GO:0005515
Gma12g00565 447 SMART ANK_2a 157 186 IPR002110 GO:0005515
Gma12g00565 447 SMART ANK_2a 10 39 IPR002110 GO:0005515
Gma12g00565 447 Pfam Ankyrin repeats (3 copies) 112 184 IPR002110 GO:0005515
Gma12g00565 447 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Gma12g00565 447 Gene3D - 198 252 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00565 Gma-Chr12 4733522 4737015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00565 12 330 Miscellaneous Gene Families AT5G60070 27.003 1.26e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00565 - - gmx:100815043 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00565 12 4733522 4737015 Gma12g00565 12 4733522 4737015 ECH
Gma12g00565 12 4733522 4737015 Gma11g01268 11 10808940 10812090 GST
Gma13g02991 13 44424112 44427480 Gma12g00565 12 4733522 4737015 PCT
Gma15g00374 15 3150826 3154693 Gma12g00565 12 4733522 4737015 PCT
Gma12g00565 12 4733522 4737015 Gma13g02991 13 44424112 44427480 PCT
Gma12g00565 12 4733522 4737015 Gma15g00374 15 3150826 3154693 PCT