Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02958 ATGGAGTTCCTCACTTTACTTTATGGTGCTATGGCATTGTACTTGTGTTTCCTGATCTGGAAACTGTTTGATCAGAGAAGGGACCAAGAGAGTTACATATTGGACTACCAACTTTACAAGCCAAGCGATGAAAGAAAGCTTGGAACTGAACTCTGTGGGAAGATCATAGGGAGGAACAAGCAATTGGGTCTGAACGAGTACAAGTTCCTCCTCAAGGCCATTGTCAACTCTGGCATTGGTGAGGAAACTTATGCCCCAAGAAACGTCATCGAGGGCCGAGAGACGAATCCAACATTGGATGATAGTGTCACAGAAATGGAGGAGTTTTTCCATGACAGCATTGCCAAACTCCTCGAAAGGTCAGGGATTTCCCCCTCACAGATCGATGTGCTTGTGGTGAATGTGTCCATGTTCGCTGTAGTTCCTTCCTTAACTTCAAGAATCATTAACCACTACAAGATGAGGGAGGACATAAAGGCTTACAACCTCACTGGGATGGGGTGCAGTGCTAGCCTCATTTCCTTGGACATCATAAGGAACATTTTCAAGTCACAAAAGAACAAGATTGCTCTTTTGGTGACTTCCGAGTCTCTAAGTCCAAACTGGTACAATGGCAACGACAGATCAATGATTCTCGCCAACTGTTTGTTCAGGACGGGTGGATGTGTCATTCTCTTGACAAACAAAAGGTCCTTGAAGCAAAGGGCCATGTTCAAGTTGAAGTGCTTGGTGAGGACTCATCATGGTGCTAAAGAAGATGCCTATAGTTGCTGCAATCAGAAGGAAGATGAGCAAGGCAATCTTGGGTTTTACCTTGCCAAGAATCTCCCCAAGGCAGCAACAAGGGCATTTGTTGAGAACCTAAGGATGTTGTCACCCAAGGTTTTGCCAACTAGGGAGCTTCTAAGGTTCATGATTGTGTCCCTCATAAAGAAACTGAGCCAAACTAGTTCCCTAAAGTCCTCAAGTGGTGGATCTAGCAAATCTAGTAAATCACCTTTAAACTTCAAGACTGGGGTAGAACATTTTTGTCTCCACACAGGAGGAAAGGCTGTGATAGATGGGATTGGAAAAAGCTTGGATCTTTGTGAGTATGATCTTGAGCCAGCAAGGATGACACTTCACCGTTTTGGTAACACTTCAGCAAGTAGCCTTTGGTATGTGCTAGGGTACATGGAGGCCAAGAAGAGGCTCAAGAAAGGTGACAGAGTACTGATGATAAGCTTTGGTGCTGGCTTTAAATGCAACAGCTGTTTGTGGGAGGTAATGAAGGATCTTGGGGATCATACAAATGTGTGGAGTTACTGCATTGATGACTACCCACCAGAGTCCTTGGCCAACCCTTTCATGGAGACCTTTGGTTGGATCAACAATGTCGAAGATGCAACCAACTTCAAACTTCCTGATTTGTTTCTCAAGTAA 1422 0.4451 MEFLTLLYGAMALYLCFLIWKLFDQRRDQESYILDYQLYKPSDERKLGTELCGKIIGRNKQLGLNEYKFLLKAIVNSGIGEETYAPRNVIEGRETNPTLDDSVTEMEEFFHDSIAKLLERSGISPSQIDVLVVNVSMFAVVPSLTSRIINHYKMREDIKAYNLTGMGCSASLISLDIIRNIFKSQKNKIALLVTSESLSPNWYNGNDRSMILANCLFRTGGCVILLTNKRSLKQRAMFKLKCLVRTHHGAKEDAYSCCNQKEDEQGNLGFYLAKNLPKAATRAFVENLRMLSPKVLPTRELLRFMIVSLIKKLSQTSSLKSSSGGSSKSSKSPLNFKTGVEHFCLHTGGKAVIDGIGKSLDLCEYDLEPARMTLHRFGNTSASSLWYVLGYMEAKKRLKKGDRVLMISFGAGFKCNSCLWEVMKDLGDHTNVWSYCIDDYPPESLANPFMETFGWINNVEDATNFKLPDLFLK 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02958 473 CDD CHS_like 12 420 - -
Gma13g02958 473 SUPERFAMILY Thiolase-like 243 423 IPR016039 GO:0016746
Gma13g02958 473 Gene3D - 61 422 IPR016039 GO:0016746
Gma13g02958 473 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 340 421 IPR013747 -
Gma13g02958 473 PANTHER 3-KETOACYL-COA SYNTHASE 1 462 - -
Gma13g02958 473 SUPERFAMILY Thiolase-like 17 232 IPR016039 GO:0016746
Gma13g02958 473 PANTHER 3-KETOACYL-COA SYNTHASE 1 462 IPR012392 GO:0006633|GO:0016020|GO:0016747
Gma13g02958 473 Pfam FAE1/Type III polyketide synthase-like protein 25 312 IPR013601 GO:0006633|GO:0016020|GO:0016747
Gma13g02958 473 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 455 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02958 Gma-Chr13 44156968 44158389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02958 19 472 Acyl Lipid Metabolism Gene Families AT2G28630 69.281 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02958 K15397 - gmx:100776947 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02958 13 44156968 44158389 Gma13g02958 13 44156968 44158389 ECH
Gma13g02958 13 44156968 44158389 Gma15g00407 15 3408280 3409773 ECH
Gma13g02958 13 44156968 44158389 Gma15g00407 15 3408280 3409773 GST
Gma13g02958 13 44156968 44158389 Gma12g00667 12 5777142 5779078 PCT
Gma13g02958 13 44156968 44158389 Gma11g01312 11 11246014 11247429 PCT
Gma12g00667 12 5777142 5779078 Gma13g02958 13 44156968 44158389 PCT
Gma11g01312 11 11246014 11247429 Gma13g02958 13 44156968 44158389 PCT