Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00667 ATGGAGTTGATCTACCTACTCTATCTGGTTCCAACGTTGTACGCGTGTTTCCTCATATGGAAGATGTTGGACGAGAGAAGGGACAGGGAGTGTTACATCTTAAACTACCAATGCTACAAGCCCCCCAACGACAGAATGCTCGGCACCGAGTTCTGTGGCAAGCTTATCAGACGCACCGAAAACCTGGGCCCCAGCGAGTACCGCTTCCTCCTCAAAGCCATCGTCAGCTCCGGCATCGGCGAACAAACGTACGCCCCAAGAAACATCTTCGAGGGCCGCGAGGCCACTCCCACGTTGCGCGACAGCATCGGAGAAATGGAGGAGTTCTTTCACGACAGCATTGGAAAACTCCTCGCGAAATCTAACGTCTCCCCCTCCGAGATCGACGTCCTCGTCGTCAACATCTCCATGCTCGCCACCGTCCCTTCCCTCTCCTCTCGAATCATCAACCACTACAAAATGCGCCACGATGTCAAGGTCTACAACCTCACCGGCATGGGCTGCAGCGCCAGTCTCATCTCAATGGACATAGTCAAATGCATTTTCAAGACGCAGCGCAACAAGCTCGCGCTGCTGATCACTTCGGAGTCTTTAAGTCCAAATTGGTATACGGGAAGCGACAGATCCATGATTCTCGCGAACTGTCTCTTCCGTTCTGGCGGCTGCGCGATTCTTTTGACGAACAAAAGATCGTTAAAGGACAAAGCCATGCTGAGGTTGAAGTGTTTGGTGAGAACGCATCACGGTGCTAGAGAAGAAGCTTATGGCTGCTGTACCCAGCAGGAAGATGATCAAGGAAGACTCGGATTTCATCTTGGGAAGACTCTTCCCAAGGCTGCCACCCGAGCCTTCGTTGATAATCTTCGAGTCATAGCACCCAAGATATTACCTATCCGTGAGTTGCTCAGGTTTTTGTTCGTGTCCACTATTAAAAAAATCAACAAGAGTAGTAACGCTCCCAAGTCCGTTGCGAGCACCGGAGCGACAAAATCACCATTGAACTTCCGAACCGGGGTTGATCATTTTTGCCTTCACACCGGAGGAAAGGCGGTGATCGACGGGATCGGAATGAGCTTGGATCTGAGCGAGTATGACCTGGAACCGGCGAGGATGACGCTGCACCGGTTCGGGAACACGTCGGCGAGTAGCTTGTGGTACGTGCTATCGTACATGGAGGCGAAGAAGAGGCTGAAGAAGGGGGACACGGTGTTCATGATAAGCTTTGGTGCGGGCTTTAAATGTAACAGCTGTTTGTGGGAGGTGATGAAGGACTTGGGGGAGGCGAATGTGTGGGACGATTGCATTGATGAGTACCCACCAGAGTCATTGGCCAACCCCTTCATGGAGGCCTATGGTTGGATCAATGAAGTTGATGATCCGTACACTTACGAACATCTTCCAGAATTTCTCAAGTGA 1416 0.5148 MELIYLLYLVPTLYACFLIWKMLDERRDRECYILNYQCYKPPNDRMLGTEFCGKLIRRTENLGPSEYRFLLKAIVSSGIGEQTYAPRNIFEGREATPTLRDSIGEMEEFFHDSIGKLLAKSNVSPSEIDVLVVNISMLATVPSLSSRIINHYKMRHDVKVYNLTGMGCSASLISMDIVKCIFKTQRNKLALLITSESLSPNWYTGSDRSMILANCLFRSGGCAILLTNKRSLKDKAMLRLKCLVRTHHGAREEAYGCCTQQEDDQGRLGFHLGKTLPKAATRAFVDNLRVIAPKILPIRELLRFLFVSTIKKINKSSNAPKSVASTGATKSPLNFRTGVDHFCLHTGGKAVIDGIGMSLDLSEYDLEPARMTLHRFGNTSASSLWYVLSYMEAKKRLKKGDTVFMISFGAGFKCNSCLWEVMKDLGEANVWDDCIDEYPPESLANPFMEAYGWINEVDDPYTYEHLPEFLK 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00667 471 CDD CHS_like 19 419 - -
Gma12g00667 471 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 453 IPR012392 GO:0006633|GO:0016020|GO:0016747
Gma12g00667 471 SUPERFAMILY Thiolase-like 243 422 IPR016039 GO:0016746
Gma12g00667 471 PANTHER 3-KETOACYL-COA SYNTHASE 1 460 IPR012392 GO:0006633|GO:0016020|GO:0016747
Gma12g00667 471 SUPERFAMILY Thiolase-like 18 231 IPR016039 GO:0016746
Gma12g00667 471 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 339 420 IPR013747 -
Gma12g00667 471 Gene3D - 73 421 IPR016039 GO:0016746
Gma12g00667 471 Pfam FAE1/Type III polyketide synthase-like protein 25 309 IPR013601 GO:0006633|GO:0016020|GO:0016747
Gma12g00667 471 PANTHER 3-KETOACYL-COA SYNTHASE 1 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00667 Gma-Chr12 5777142 5779078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00667 19 470 Acyl Lipid Metabolism Gene Families AT2G28630 69.063 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00667 K15397 - gmx:100810048 961.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00667 12 5777142 5779078 Gma12g00667 12 5777142 5779078 ECH
Gma11g01312 11 11246014 11247429 Gma12g00667 12 5777142 5779078 ECH
Gma12g00667 12 5777142 5779078 Gma11g01312 11 11246014 11247429 GST
Gma13g02958 13 44156968 44158389 Gma12g00667 12 5777142 5779078 PCT
Gma15g00407 15 3408280 3409773 Gma12g00667 12 5777142 5779078 PCT
Gma12g00667 12 5777142 5779078 Gma13g02958 13 44156968 44158389 PCT
Gma12g00667 12 5777142 5779078 Gma15g00407 15 3408280 3409773 PCT