Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02930 ATGAGAGGTAGCAACCACTTGATCGGTTTGTTAAACTTCTTGACTTTTTTGCTGTCAGTTCCAATCCTTGTGTGTGGGATATGGCTGAGCACCAGAGCTAACAACACAGAATGCCTCAAGTTCCTTCAGTGGCCGTTAATCGTCATAGGAATCAGCGTCATGGTTACATCCTTAGCCGGTTTGGTCGGAGCCTGTTACCGGAACAGCTTCCTCATGAGCCTCTACCTCGTTGTCATGCTCTTCATACTCTTGGTCCTCGTTGGCTTCATCGTCTTTGCATATGCTGTCACAGCCAAGGGTTCCGGGAGGGAGACACTGAACCGCGCTTACTTGGAGTATTACCTGCAGGACTACGATGGTTGGTTGAAGAAACGCGTGGAAAGTGATGGCTATTGGAGAAAGATAAGGTCTTGTGTTAGGGACTCTAGGGTTTGTGGGAAGATTGGGAGAACCGTTGATGGGGTGCCTGAAACTGCTGATATGTTCTACCTCAGGAAGCTCTCTCCTATTCAGTCTGGATGCTGCAAGCCCCAGAGAGAGTGTGGGTATGTGTATGAGAACGAGACGGTGTGGAGGCCAAGAGAAGGAGTGGTGGTGGGAAGCAACCCAGACTGCACTAGGTGGAGCAATGACCAACACTTGCTTTGCTATGACTGTGACTCATGCAAGGCTGGTGTGTTGGCTACTCTAAAGAAAAGTTGGAGGAAGGTTTCCGTCATTAATATTCCTGTCTTGGTAACCCTTGTGGTTCTTTACATCATTGCTTATGCTGCGTATAAGAACAACCGCAGGATAAATAACTGCGAACCATGTGGTCAAACAAGGATGACAACATTACAACCTAAGTAG 849 0.4782 MRGSNHLIGLLNFLTFLLSVPILVCGIWLSTRANNTECLKFLQWPLIVIGISVMVTSLAGLVGACYRNSFLMSLYLVVMLFILLVLVGFIVFAYAVTAKGSGRETLNRAYLEYYLQDYDGWLKKRVESDGYWRKIRSCVRDSRVCGKIGRTVDGVPETADMFYLRKLSPIQSGCCKPQRECGYVYENETVWRPREGVVVGSNPDCTRWSNDQHLLCYDCDSCKAGVLATLKKSWRKVSVINIPVLVTLVVLYIIAYAAYKNNRRINNCEPCGQTRMTTLQPK 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02930 282 PRINTS Transmembrane four family signature 6 29 - -
Gma13g02930 282 PRINTS Transmembrane four family signature 39 65 - -
Gma13g02930 282 PRINTS Transmembrane four family signature 66 94 - -
Gma13g02930 282 ProSitePatterns Transmembrane 4 family signature. 50 72 IPR018503 GO:0016021
Gma13g02930 282 PANTHER TETRASPANIN-8-RELATED 1 279 IPR044991 GO:0009734|GO:0016021
Gma13g02930 282 Pfam Tetraspanin family 6 254 IPR018499 GO:0016021
Gma13g02930 282 PANTHER TETRASPANIN-3-LIKE 1 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02930 Gma-Chr13 43855718 43859069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02930 1 279 Miscellaneous Gene Families AT5G60220 66.667 8.18e-122 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02930 - - gmx:100820399 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02930 13 43855718 43859069 Gma13g02930 13 43855718 43859069 ECH
Gma13g02930 13 43855718 43859069 Gma12g00642 12 5377353 5382718 PCT
Gma13g02930 13 43855718 43859069 Gma11g01342 11 11643261 11649994 PCT
Gma12g00642 12 5377353 5382718 Gma13g02930 13 43855718 43859069 PCT
Gma11g01342 11 11643261 11649994 Gma13g02930 13 43855718 43859069 PCT