Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00642 ATGCGTTCCCAAGCCACAGTTATTTGTTTAATTACACACCACACTCATCTGCATCTAATAAATACTCCCTTACTTGTGTTCGGAGCACTAGAAAAGAAAACCATAATTAAGATGAGAACAAGCAACCACTTGATCGGTCTTCTGAACTTCCTAACGTTCCTGCTGTCGATTCCGATCCTAGGTGGCGGAATATGGCTGAGCAGCAGGGCCAACAACACCGACTGCCTCAAGTTCCTGCAGTGGCCGCTCATCATCATCGGAGTCAGCATCATGGTCGTGTCCCTCGCGGGGTTCGCCGGCGCGTGCTACCGCAACACCTTCCTCATGCGCCTCTACCTCGTCGTCATGTTCCTCGTCATCGCCGTCCTCATCGGGTTCATCATATTCGCCTACGTTGTCACTGACAAAGGCTCCGGTCGGAGGGTCATGAACCGCGCGTACTTGGAGTACTACCTCGAGGACTATTCGGGGTGGTTGGAGGAGCGCGTGGCGAGTGAGAGCTACTGGGGAAAGATTGCTTCGTGTATTAGGGATTCTAAAGTGTGTGGTAGGATGGGGAGAACCGTTAATGGGATGCCCCAAACTCCTGATATGTTCTACCTCACCCACCTCACGCCTATTCAGTCTGGTTGCTGCAAGCCCCCAACAGATTGTGGATATGTGTATCAGAATGAGACAGTGTGGATCCCAGGATCAGGATTGATGGGAACCAACGCAGATTGCACAAGGTGGAGCAATGACCAAGAGCAGCTTTGCTATGCCTGTGATTCTTGCAAGGCTGGTGTGCTGGCAAGTCTCAAGAAGAGTTGGAGGAAGGTCTCAGTGATCAACATTGTTGTTATGATCATCCTTGTGATTGTTTACATAATTGCTTATGCAGCATATAGAAACAACCGCAAGATGGATAACGATGAGCCCTATGGTGAAGCAAGGATGACAAAGGCACAACCTAGTGCTTTTCATCTTTAG 969 0.4964 MRSQATVICLITHHTHLHLINTPLLVFGALEKKTIIKMRTSNHLIGLLNFLTFLLSIPILGGGIWLSSRANNTDCLKFLQWPLIIIGVSIMVVSLAGFAGACYRNTFLMRLYLVVMFLVIAVLIGFIIFAYVVTDKGSGRRVMNRAYLEYYLEDYSGWLEERVASESYWGKIASCIRDSKVCGRMGRTVNGMPQTPDMFYLTHLTPIQSGCCKPPTDCGYVYQNETVWIPGSGLMGTNADCTRWSNDQEQLCYACDSCKAGVLASLKKSWRKVSVINIVVMIILVIVYIIAYAAYRNNRKMDNDEPYGEARMTKAQPSAFHL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00642 322 PRINTS Transmembrane four family signature 43 66 - -
Gma12g00642 322 PRINTS Transmembrane four family signature 76 102 - -
Gma12g00642 322 PRINTS Transmembrane four family signature 103 131 - -
Gma12g00642 322 Pfam Tetraspanin family 43 290 IPR018499 GO:0016021
Gma12g00642 322 PANTHER TETRASPANIN-8-RELATED 38 316 IPR044991 GO:0009734|GO:0016021
Gma12g00642 322 PANTHER TETRASPANIN-3-LIKE 38 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00642 Gma-Chr12 5377353 5382718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00642 38 314 Miscellaneous Gene Families AT5G60220 72.563 6.30e-133 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00642 - - gmx:100798336 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00642 12 5377353 5382718 Gma12g00642 12 5377353 5382718 ECH
Gma12g00642 12 5377353 5382718 Gma11g01342 11 11643261 11649994 GST
Gma13g02930 13 43855718 43859069 Gma12g00642 12 5377353 5382718 PCT
Gma12g00642 12 5377353 5382718 Gma13g02930 13 43855718 43859069 PCT