Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02900 ATGTACAAGAACCAGCTTCAAGAGCTGGCCCAGCGGAGCTGCTTCAACCTGCCTTCCTACACGTGTATTCGGGAAGGTCCCGATCACGCGCCAAGGTTCAAGGCCACCGTCAACTTTAACGGCGAGATCTTCGAGACCCCTCACTACTGCTCCACTCTCCGTCAGGCCGAACACTCCGCCGCCGAAGCCGCTCTCAATTCCCTCTCCCACCGTGGCCCCTCCCATTCCCTCGCCGCTAAGATCCTCGATGAGACTGGAGTGTACAAGAACCTTCTACAGGAAATTGCGCAAAGGGTAGGAGCTCCATTGCCTCATTACACAACGTACAGGTCAGGCTTAGGACATTTACCTGTTTTTACCGGGATAGTAGAACTGGCTGGAATCACGTTCACTGGTGAACCTGCCAAGAATAAGAAACAAGCTGAGAAAAATGCAGCTATGGCAGCTTGGTCCGCTTTAAAACAATTGGCAAAAGAGACTGCAAGCTCCTCAACTGAACCAGAGAACAATGACGAAGTGGAACAGATTACAATAGCGCGGGCTTTACTGAACTACCGTTTGAAGGAAAAGATGACTATGTCTAATCCAAATGCTCCCCTTCCATTTCATGAAAGGTTTCAGATTCAAAATCCAAGGCCAATCAGTTCTCAACCGCCCCCAGCCACTTCATCAAAGATCCTTCCCCTAATTTGCCAGAAGACAGCACCTCGAAGTAAGCCTTCATTGGCAACAACAACAACAAATGAAAGTCCTGGAAGCAGGCATCCACAGGCAGCAGTGGCAGTGACCAGTGACAATTCCAACCTGCCACAACAATCTTGTTCTCTAGAATGCCGAGCGACCCGTCCCCTGAAGTTTCCTGCAGCAGGAGCAGCACCTTATGTTCCCATTCGACAAATGAGACCATCTTGCCAACGGATTGCACCTCCGGTGACTATAAGGACAGTTGTACCTGCATTCGCTGCACCACCTGCCTCGGTGCCCCATCCTGTTATACGGGCTCCTCCAGTACGAGTTGCTCCTCCAGTCACTATTCGACAAGCTGTTCCATTATATGCTGCTCCCAAACAACAAAAAGATCTACCAACTGCTAATGCCTCGGGCCAGCAAGACAAACTGCCCGTTAAAATTCAGGAGATGGACAAGGTTGAGAACATTACACCAGAATCAAACTATGCGTAG 1182 0.5 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFETPHYCSTLRQAEHSAAEAALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVFTGIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKETASSSTEPENNDEVEQITIARALLNYRLKEKMTMSNPNAPLPFHERFQIQNPRPISSQPPPATSSKILPLICQKTAPRSKPSLATTTTNESPGSRHPQAAVAVTSDNSNLPQQSCSLECRATRPLKFPAAGAAPYVPIRQMRPSCQRIAPPVTIRTVVPAFAAPPASVPHPVIRAPPVRVAPPVTIRQAVPLYAAPKQQKDLPTANASGQQDKLPVKIQEMDKVENITPESNYA 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02900 393 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Gma13g02900 393 Pfam Double-stranded RNA binding motif 88 152 IPR014720 -
Gma13g02900 393 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Gma13g02900 393 Gene3D - 2 83 - -
Gma13g02900 393 SUPERFAMILY dsRNA-binding domain-like 88 159 - -
Gma13g02900 393 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Gma13g02900 393 MobiDBLite consensus disorder prediction 356 393 - -
Gma13g02900 393 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Gma13g02900 393 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Gma13g02900 393 Gene3D - 84 155 - -
Gma13g02900 393 MobiDBLite consensus disorder prediction 237 266 - -
Gma13g02900 393 MobiDBLite consensus disorder prediction 234 266 - -
Gma13g02900 393 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Gma13g02900 393 PANTHER - 1 367 - -
Gma13g02900 393 SMART DRBM_3 88 154 IPR014720 -
Gma13g02900 393 SMART DRBM_3 2 69 IPR014720 -
Gma13g02900 393 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 2 1 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02900 Gma-Chr13 43594280 43597076 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02900 - - gmx:100814005 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02900 13 43594280 43597076 Gma13g02900 13 43594280 43597076 ECH
Gma13g02900 13 43594280 43597076 Gma12g00673 12 5882292 5885517 PCT
Gma13g02900 13 43594280 43597076 Gma11g01638 11 17739622 17743494 PCT
Gma12g00673 12 5882292 5885517 Gma13g02900 13 43594280 43597076 PCT
Gma11g01638 11 17739622 17743494 Gma13g02900 13 43594280 43597076 PCT