Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02854 ATGGGGGCTGCTTTTGTTATCTCCGTCTTGATGTTTGCCGCGTTAGCTGGCGGATCTCCGGCGAGTCTGACTTTGGAGAGAGCGTTTCCGACGAATCACACAGTGGAGCTGAGTCAGCTGAGAGCTCGTGACGCGTTGAGGCATCGCAGAATGTTGCAGTCTTCAAACGGCGTCGTCGATTTCTCCGTTCAAGGCACCTTCGATCCCTTCCAAGTCGGGCTCTACTATACAAAAGTGCAGTTGGGTACTCCTCCAGTGGAATTTAATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGTTGTAACTCCTGCAGTGGTTGTCCTCAAACAAGTGGGCTTCAGATTCAGCTAAATTTTTTTGACCCCGGGAGTTCATCAACATCTTCAATGATCGCTTGTTCTGACCAAAGGTGCAATAATGGAATACAATCATCAGATGCCACATGTTCCAGCCAGAACAACCAGTGCTCCTACACTTTCCAGTATGGAGATGGGAGTGGGACATCAGGCTATTATGTGTCAGATATGATGCATTTGAACACCATTTTTGAGGGATCCGTGACCACGAATTCTACTGCACCTGTAGTTTTTGGTTGTAGCAACCAGCAAACTGGGGACTTGACAAAGTCTGATAGAGCAGTTGATGGGATATTTGGATTTGGGCAACAGGAAATGTCTGTCATTTCTCAACTTTCCTCACAAGGAATTGCTCCAAGAGTATTCTCACATTGTCTGAAAGGAGATAGTAGTGGTGGGGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAACATAGTCTACACTTCACTTGTTCCAGCACAGCCTCATTACAATTTAAATCTACAGAGCATCGCTGTCAATGGCCAGACATTGCAAATTGATTCATCAGTTTTTGCAACATCAAACAGCAGAGGTACCATTGTTGATTCTGGAACAACTTTGGCGTACCTTGCGGAAGAGGCTTATGATCCCTTTGTCTCTGCGATTACAGCTTCAATTCCACAATCTGTACACACTGTTGTTTCCAGGGGAAATCAGTGTTATTTAATCACATCCAGTGTCACTGAAGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGTGGTGCATCTATGATTTTAAGGCCTCAGGACTACCTGATACAGCAGAATTCCATTGGTGGTGCAGCAGTGTGGTGTATTGGCTTTCAGAAAATCCAGGGTCAAGGGATAACAATTCTAGGAGATCTCGTATTAAAAGACAAAATTGTTGTTTATGATCTGGCTGGTCAACGCATTGGATGGGCTAACTATGACTGTTCTTTGTCGGTGAATGTCTCTGCAACAACTGGCACTGGCAGAAGTGAATTTGTGAATGCTGGTGAGATAGGTGGAAACATCTCTTTACGTGATGGACTTAAGTTGACAAGGACAGGGTTCTTGGCTTTCTTTGTGCATCTAACGCTAATTTACTGCTTCGGATTCTTATAG 1473 0.4467 MGAAFVISVLMFAALAGGSPASLTLERAFPTNHTVELSQLRARDALRHRRMLQSSNGVVDFSVQGTFDPFQVGLYYTKVQLGTPPVEFNVQIDTGSDVLWVSCNSCSGCPQTSGLQIQLNFFDPGSSSTSSMIACSDQRCNNGIQSSDATCSSQNNQCSYTFQYGDGSGTSGYYVSDMMHLNTIFEGSVTTNSTAPVVFGCSNQQTGDLTKSDRAVDGIFGFGQQEMSVISQLSSQGIAPRVFSHCLKGDSSGGGILVLGEIVEPNIVYTSLVPAQPHYNLNLQSIAVNGQTLQIDSSVFATSNSRGTIVDSGTTLAYLAEEAYDPFVSAITASIPQSVHTVVSRGNQCYLITSSVTEVFPQVSLNFAGGASMILRPQDYLIQQNSIGGAAVWCIGFQKIQGQGITILGDLVLKDKIVVYDLAGQRIGWANYDCSLSVNVSATTGTGRSEFVNAGEIGGNISLRDGLKLTRTGFLAFFVHLTLIYCFGFL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02854 490 PANTHER ASPARTYL PROTEASES 3 451 IPR001461 GO:0004190|GO:0006508
Gma13g02854 490 SUPERFAMILY Acid proteases 70 437 IPR021109 -
Gma13g02854 490 Pfam Xylanase inhibitor C-terminal 278 430 IPR032799 -
Gma13g02854 490 Gene3D Acid Proteases 262 441 IPR021109 -
Gma13g02854 490 Pfam Xylanase inhibitor N-terminal 75 260 IPR032861 -
Gma13g02854 490 Gene3D Acid Proteases 53 261 IPR021109 -
Gma13g02854 490 CDD pepsin_A_like_plant 75 434 IPR034161 -
Gma13g02854 490 PRINTS Pepsin (A1) aspartic protease family signature 81 101 IPR001461 GO:0004190|GO:0006508
Gma13g02854 490 PRINTS Pepsin (A1) aspartic protease family signature 308 319 IPR001461 GO:0004190|GO:0006508
Gma13g02854 490 PRINTS Pepsin (A1) aspartic protease family signature 406 421 IPR001461 GO:0004190|GO:0006508
Gma13g02854 490 ProSiteProfiles Peptidase family A1 domain profile. 75 430 IPR033121 -
Gma13g02854 490 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 3 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02854 Gma-Chr13 43039759 43044109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02854 49 435 Miscellaneous Gene Families AT1G44130 26.617 1.43e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02854 - K00924 gmx:100795803 977.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02854 13 43039759 43044109 Gma13g02854 13 43039759 43044109 ECH
Gma13g02854 13 43039759 43044109 Gma12g01697 12 37448827 37453798 GST
Gma13g02854 13 43039759 43044109 Gma12g00743 12 6750084 6755223 PCT
Gma13g02854 13 43039759 43044109 Gma11g01564 11 16750074 16754984 PCT
Gma12g00743 12 6750084 6755223 Gma13g02854 13 43039759 43044109 PCT
Gma11g01564 11 16750074 16754984 Gma13g02854 13 43039759 43044109 PCT