Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00743 ATGGAAACGGTGGCCGCCGCTTTTTTCTTCGCCGCCGTGGTTCTGTCGGCGGTTGGCGGGTCGCCGGTGACTCTGACGCTGGAAAGAGCGTTCCCTTCGAATGATGGGGTGGAATTGAGTGAGCTCAGAGCGAGGGACAGCCTCAGACATCGTAGAATGTTGCAGTCTACTAACTACGTTGTAGATTTCCCTGTCAAAGGCACCTTCGATCCCTCACAAGTCGGGCTTTACTATACAAAGGTGAAATTGGGTACTCCTCCAAGGGAATTCTATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGTTGTGGGTCCTGCAACGGTTGTCCTCAGACAAGTGGGCTCCAAATTCAGCTCAATTACTTTGATCCTCGGAGTTCATCAACATCTTCGTTGATCTCTTGTTCAGACCGAAGGTGCAGGAGTGGAGTACAGACCTCGGATGCAACCTGTTCCAGTCAGAACAACCAGTGCACTTACACATTTCAGTATGGAGATGGTAGTGGGACATCAGGCTATTATGTCTCAGACTTGATGCATTTTGCTGGTATTTTTGAGGGAACCTTGACTACAAATTCTTCGGCATCTGTAGTTTTTGGTTGTAGCATCCTGCAGACTGGGGACTTAACAAAGTCTGAGAGAGCAGTTGATGGGATATTCGGATTTGGGCAACAGGGCATGTCTGTCATTTCCCAACTCTCGTTGCAGGGAATAGCACCAAGAGTGTTCTCCCATTGCCTGAAAGGAGATAATAGTGGTGGGGGCGTATTGGTTCTTGGTGAAATTGTGGAGCCAAACATAGTTTATAGTCCACTTGTTCAATCACAGCCACATTACAATTTAAATCTGCAGAGCATCTCTGTTAATGGCCAAATTGTGCCAATTGCCCCTGCAGTTTTTGCTACATCAAACAACAGAGGTACCATTGTTGATTCTGGAACAACTTTGGCATACCTTGCAGAAGAGGCTTACAATCCCTTTGTCAATGCGATTACAGCTCTTGTTCCACAATCTGTACGCAGTGTTCTTTCCAGAGGAAATCAGTGTTACTTAATAACCACCTCCAGCAATGTTGACATTTTTCCACAAGTAAGTCTGAACTTCGCTGGTGGTGCATCTCTGGTTTTAAGACCACAGGATTACCTTATGCAGCAGAATTATATTGGCGAGGGATCAGTGTGGTGTATTGGCTTTCAGAGAATTCCGGGGCAAAGTATAACTATTCTAGGAGACCTCGTATTAAAAGACAAAATTTTTGTCTACGATCTTGCTGGTCAACGCATTGGATGGGCTAACTATGATTGTTCATTGCCGGTTAATGTATCTGCATCAGCTGGTAGGGGCAGAAGTGAGTTTGTGGACGCGGGAGAGCTAAGTGGCAGCTCTTCTTTACGTGCTGGGCTTCACATGTTGATAAATACACTGTTCCTTGCTCTCTTCATGCACATAACTTTAATTTTGTAG 1470 0.4578 METVAAAFFFAAVVLSAVGGSPVTLTLERAFPSNDGVELSELRARDSLRHRRMLQSTNYVVDFPVKGTFDPSQVGLYYTKVKLGTPPREFYVQIDTGSDVLWVSCGSCNGCPQTSGLQIQLNYFDPRSSSTSSLISCSDRRCRSGVQTSDATCSSQNNQCTYTFQYGDGSGTSGYYVSDLMHFAGIFEGTLTTNSSASVVFGCSILQTGDLTKSERAVDGIFGFGQQGMSVISQLSLQGIAPRVFSHCLKGDNSGGGVLVLGEIVEPNIVYSPLVQSQPHYNLNLQSISVNGQIVPIAPAVFATSNNRGTIVDSGTTLAYLAEEAYNPFVNAITALVPQSVRSVLSRGNQCYLITTSSNVDIFPQVSLNFAGGASLVLRPQDYLMQQNYIGEGSVWCIGFQRIPGQSITILGDLVLKDKIFVYDLAGQRIGWANYDCSLPVNVSASAGRGRSEFVDAGELSGSSSLRAGLHMLINTLFLALFMHITLIL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00743 489 ProSiteProfiles Peptidase family A1 domain profile. 77 433 IPR033121 -
Gma12g00743 489 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 4 454 - -
Gma12g00743 489 PANTHER ASPARTYL PROTEASES 4 454 IPR001461 GO:0004190|GO:0006508
Gma12g00743 489 Pfam Xylanase inhibitor N-terminal 77 262 IPR032861 -
Gma12g00743 489 CDD pepsin_A_like_plant 77 437 IPR034161 -
Gma12g00743 489 Pfam Xylanase inhibitor C-terminal 280 433 IPR032799 -
Gma12g00743 489 Gene3D Acid Proteases 264 442 IPR021109 -
Gma12g00743 489 Gene3D Acid Proteases 51 263 IPR021109 -
Gma12g00743 489 SUPERFAMILY Acid proteases 74 439 IPR021109 -
Gma12g00743 489 PRINTS Pepsin (A1) aspartic protease family signature 83 103 IPR001461 GO:0004190|GO:0006508
Gma12g00743 489 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190|GO:0006508
Gma12g00743 489 PRINTS Pepsin (A1) aspartic protease family signature 310 321 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00743 Gma-Chr12 6750084 6755223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00743 51 438 Miscellaneous Gene Families AT1G44130 25.432 3.04e-34 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00743 - K00924 gmx:100789004 946.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00743 12 6750084 6755223 Gma12g00743 12 6750084 6755223 ECH
Gma12g00743 12 6750084 6755223 Gma11g01564 11 16750074 16754984 GST
Gma13g02854 13 43039759 43044109 Gma12g00743 12 6750084 6755223 PCT
Gma12g01697 12 37448827 37453798 Gma12g00743 12 6750084 6755223 PCT
Gma12g00743 12 6750084 6755223 Gma13g02854 13 43039759 43044109 PCT
Gma12g00743 12 6750084 6755223 Gma12g01697 12 37448827 37453798 PCT