Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01697 ATGGCGGCGGCGGCGGCTGCTTTTGTTATCTCCGTCGCGCTGTTGGCGGCGGTAGCTGGCGGATCGCCGGCGACTCTGACTTTGGAAAGAGCGTTTCCGACGAATCACGGGGTGGAGCTGAGTCAGCTGAGAGCTCGCGACGAGTTGAGGCATCGCAGAATGTTGCAGTCTTCAAGCGGCGTCGTGGATTTCTCCGTTCAAGGCACCTTTGATCCCTTCCAAGTCGGGCTCTACTATACAAAAGTGCAGTTGGGTACTCCTCCAGTGGAATTTAATGTGCAGATTGACACTGGTAGTGATGTTCTCTGGGTTAGTTGCAACTCCTGCAATGGTTGTCCTCAAACAAGTGGGCTTCAGATTCAGCTCAATTTTTTTGACCCTGGAAGTTCATCAACATCTTCAATGATCGCTTGTTCTGACCAAAGGTGCAATAATGGAAAACAATCATCAGATGCCACCTGTTCCAGTCAGAACAACCAGTGCTCCTACACTTTCCAGTATGGAGATGGGAGTGGGACATCAGGCTATTATGTGTCAGATATGATGCATTTGAACACCATTTTTGAGGGATCCATGACCACAAATTCTACTGCGCCTGTAGTTTTTGGATGTAGCAATCAGCAAACTGGGGACTTGACAAAGTCTGATAGAGCAGTTGATGGGATATTTGGATTTGGGCAACAGGAAATGTCTGTCATTTCTCAGCTCTCCTCGCAAGGGATTGCTCCAAGAATATTCTCTCATTGTCTGAAAGGAGATAGTAGTGGTGGGGGCATATTGGTTCTTGGGGAGATTGTGGAGCCAAACATAGTCTACACTTCACTTGTCCCAGCACAGCCTCATTACAATTTAAATCTACAAAGTATCTCTGTCAACGGCCAGACATTGCAAATTGATTCTTCAGTTTTTGCAACATCAAACAGCAGAGGTACCATTGTTGATTCTGGAACAACTTTGGCGTACCTTGCAGAAGAGGCTTATGATCCCTTTGTCTCTGCGATTACAGCTGCAATTCCACAATCTGTACGCACTGTTGTTTCCAGGGGAAATCAGTGTTACTTAATCACCTCCAGTGTCACTGACGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGCGGTGCATCTATGATTTTAAGGCCACAGGACTACCTGATACAGCAGAATTCTATAGGTGGTGCAGCAGTGTGGTGTATTGGTTTTCAGAAAATCCAGGGTCAAGGGATAACAATTCTAGGAGATCTCGTATTAAAAGACAAAATTGTTGTTTATGATCTGGCTGGTCAACGCATTGGATGGGCTAACTATGACTGTTCTTTGTCGGTGAATGTCTCTGCAACAACTGGCACGGGCAGAAGTGAATTTGTGAATGCTGGTGAGATAGGTGGGAGCATCTCTTTACGTGATGGACTCAAGTTGACAAAGACAGGATTCTTGGCTTTCTTTGTGCATCTAACGCTAATTTACTGTTTTGGATTCTTATAG 1482 0.4561 MAAAAAAFVISVALLAAVAGGSPATLTLERAFPTNHGVELSQLRARDELRHRRMLQSSSGVVDFSVQGTFDPFQVGLYYTKVQLGTPPVEFNVQIDTGSDVLWVSCNSCNGCPQTSGLQIQLNFFDPGSSSTSSMIACSDQRCNNGKQSSDATCSSQNNQCSYTFQYGDGSGTSGYYVSDMMHLNTIFEGSMTTNSTAPVVFGCSNQQTGDLTKSDRAVDGIFGFGQQEMSVISQLSSQGIAPRIFSHCLKGDSSGGGILVLGEIVEPNIVYTSLVPAQPHYNLNLQSISVNGQTLQIDSSVFATSNSRGTIVDSGTTLAYLAEEAYDPFVSAITAAIPQSVRTVVSRGNQCYLITSSVTDVFPQVSLNFAGGASMILRPQDYLIQQNSIGGAAVWCIGFQKIQGQGITILGDLVLKDKIVVYDLAGQRIGWANYDCSLSVNVSATTGTGRSEFVNAGEIGGSISLRDGLKLTKTGFLAFFVHLTLIYCFGFL 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01697 493 CDD pepsin_A_like_plant 78 437 IPR034161 -
Gma12g01697 493 Gene3D Acid Proteases 265 444 IPR021109 -
Gma12g01697 493 Pfam Xylanase inhibitor C-terminal 281 433 IPR032799 -
Gma12g01697 493 ProSiteProfiles Peptidase family A1 domain profile. 78 433 IPR033121 -
Gma12g01697 493 Gene3D Acid Proteases 56 264 IPR021109 -
Gma12g01697 493 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 454 - -
Gma12g01697 493 PRINTS Pepsin (A1) aspartic protease family signature 84 104 IPR001461 GO:0004190|GO:0006508
Gma12g01697 493 PRINTS Pepsin (A1) aspartic protease family signature 311 322 IPR001461 GO:0004190|GO:0006508
Gma12g01697 493 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190|GO:0006508
Gma12g01697 493 Pfam Xylanase inhibitor N-terminal 78 263 IPR032861 -
Gma12g01697 493 PANTHER ASPARTYL PROTEASES 5 454 IPR001461 GO:0004190|GO:0006508
Gma12g01697 493 SUPERFAMILY Acid proteases 73 440 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01697 Gma-Chr12 37448827 37453798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01697 52 438 Miscellaneous Gene Families AT1G44130 26.368 3.47e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01697 - K00924 gmx:100791299 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01697 12 37448827 37453798 Gma12g01697 12 37448827 37453798 ECH
Gma13g02854 13 43039759 43044109 Gma12g01697 12 37448827 37453798 GST
Gma12g01697 12 37448827 37453798 Gma12g00743 12 6750084 6755223 PCT
Gma12g01697 12 37448827 37453798 Gma11g01564 11 16750074 16754984 PCT
Gma12g00743 12 6750084 6755223 Gma12g01697 12 37448827 37453798 PCT
Gma11g01564 11 16750074 16754984 Gma12g01697 12 37448827 37453798 PCT