Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02693 ATGTCCAAGATGTTGGGAGTGTTTGTGGGACTTTTGCTGTTGGTGGGGTTGGCTGCCTCTGCCAAGTTTGATGAACTCTTCCAGCCCAGTTGGGCTATGGACCATTTCATCCATGAAGGAGAACTTCTCAAACTCAAACTTGATAACTATTCTGGTGCTGGATTTGGATCTAAGAGCAAATATATGTTTGGGAAAGTGACCATCCAGCTCAAGCTTGTGGAGGGTGACTCTGCTGGAACTGTCACTGCTTTCTATATGTCATCAGACGGCCCAACTCACAacgaatttgatttcgagtttttgggcaacaccactggtgaaccttactcagtccaaaccaacgtgtatgtgaatggcgttggcaacagggagcaaagactcaacctctggttcgaccccaccaaggacttccacacctactccatcttctggaaccagcgccaAGTTGTTTTCCTGGTGGATGAGACGCCAATAAGGGTGCACACGAACCTGGAACACAAGGGCATTCCCTTCCCGAAGGACCAAGCCATGGGCGTGTACAGCTCTATCTGGAACGCGGACGATTGGGCCACGCAGGGTGGTCGTGTGAAGACAGATTGGAGCCACGCACCCTTCGTTGCCACCTACAAGGACTTCCAAATCGACGCGTGCGCGTGCCCCGTGCCGGTGACGTCAGCAGATAGTGCTAAGAACTGTAGCAGCAGCGAGGATAAGAAGTATTGGTGGGACGAACCAACGTTGTCCGAACTGAACTTGCACCAGAGCCACCAGCTCATGTGGGTTAGGGCTAACCATATGGTTTATGATTATTGCGCCGACACTGCTAGGTTCCCCGTTATACCTGCTGAGTGTGTTCACCACCGTCACCACTGA 873 0.4192 MSKMLGVFVGLLLLVGLAASAKFDELFQPSWAMDHFIHEGELLKLKLDNYSGAGFGSKSKYMFGKVTIQLKLVEGDSAGTVTAFYMSSDGPTHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPTKDFHTYSIFWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVATYKDFQIDACACPVPVTSADSAKNCSSSEDKKYWWDEPTLSELNLHQSHQLMWVRANHMVYDYCADTARFPVIPAECVHHRHH 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02693 290 PIRSF EndGlu_transf 1 289 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gma13g02693 290 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 21 209 IPR000757 GO:0004553|GO:0005975
Gma13g02693 290 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 16 288 - -
Gma13g02693 290 Pfam Glycosyl hydrolases family 16 26 201 IPR000757 GO:0004553|GO:0005975
Gma13g02693 290 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 16 288 IPR044791 GO:0004553
Gma13g02693 290 PRINTS Glycosyl hydrolase family 16 signature 53 71 IPR008264 GO:0004553|GO:0005975
Gma13g02693 290 PRINTS Glycosyl hydrolase family 16 signature 111 124 IPR008264 GO:0004553|GO:0005975
Gma13g02693 290 PRINTS Glycosyl hydrolase family 16 signature 129 146 IPR008264 GO:0004553|GO:0005975
Gma13g02693 290 CDD GH16_XET 18 284 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gma13g02693 290 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 237 284 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Gma13g02693 290 Gene3D - 14 290 - -
Gma13g02693 290 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 288 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02693 Gma-Chr13 41624566 41626728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02693 53 289 Glycoside Hydrolase AT4G03210 79.325 9.78e-145 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02693 K08235 - gmx:100801567 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02693 13 41624566 41626728 Gma13g02693 13 41624566 41626728 ECH
Gma13g02693 13 41624566 41626728 Gma12g01864 12 39281149 39283282 GST
Gma12g00909 12 9149941 9152364 Gma13g02693 13 41624566 41626728 PCT
Gma06g02697 06 50634295 50636879 Gma13g02693 13 41624566 41626728 PCT