LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma12g00909	ATGTCTGGGTCCTTGGGATTCTTCTTTGTGGGTCTTACGTTGTTGTTGTTGGTCGGGGTGGCTAATGCTGTGGCCAACACTTCCAACAAATTTGATCAACTCTTCCAACCAAGCTGGGCTTTTGACCACTTCATTCATGAAGGGGATCTCCTCAAACTCAAACTAGACAATTTTTCCGGCGCTGGTTTTACTTCCAAGAGCAAGTATATGTTTGGGAAAGTCACCATCCAGCTTAAGCTTGTGGAAGGTGACTCTGCTGGAACAGTCACTGCTTTCTATATGTCATCGGACGGTCCAAACCACAACGAGTTTGATTTTGAGTTTCTAGGCAACACCACGGGGGAACCATACTCTGTCCAAACCAATGTGTATGTAAACGGAGTGGGCAACAGGGAGCAAAGGCTCAACCTTTGGTTCGACCCCACCAAGGATTTTCACTCATACTCTATCTTCTGGAATCAACGTCAAGTTGTATTTTTGGTGGATGAAACGCCAATAAGGGTGCACACGAACATGGAGCACAAGGGAATTCCATTTCCTAAGGACCAACCCATGGGTGTGTACAGTTCATTATGGAATGCTGATGATTGGGCCACGCAGGGTGGTCGTGTGAAAACAGATTGGAGCCACGCACCCTTCATTGCCACATACAAGAACTTCGAGATAAATGCGTGTGAGTGTCCCGTGTCAGTGGCTGCAATGGATAATGCTAAGAAGTGCACCAGCAGTGAGGGGAATAAGTATTGGTGGGATGAGCCTAATTTGGCTGAACTCAACTTGCACCAGAGCCACCAGCTTATGTGGGTTAGGGCAAGGCACATTTTCTATGACTATTGCACTGACACTGCTAGGTTCCCAGTCACGCCTGCTGAGTGTGTCCATCACCGTCACACCTGA	897	0.476	MSGSLGFFFVGLTLLLLVGVANAVANTSNKFDQLFQPSWAFDHFIHEGDLLKLKLDNFSGAGFTSKSKYMFGKVTIQLKLVEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPTKDFHSYSIFWNQRQVVFLVDETPIRVHTNMEHKGIPFPKDQPMGVYSSLWNADDWATQGGRVKTDWSHAPFIATYKNFEINACECPVSVAAMDNAKKCTSSEGNKYWWDEPNLAELNLHQSHQLMWVRARHIFYDYCTDTARFPVTPAECVHHRHT	298

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma12g00909	298	SUPERFAMILY	Concanavalin A-like lectins/glucanases	31	296	IPR013320	-
	Gma12g00909	298	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	22	217	IPR000757	GO:0004553\|GO:0005975
	Gma12g00909	298	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	245	292	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Gma12g00909	298	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	8	296	IPR044791	GO:0004553
	Gma12g00909	298	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	8	296	-	-
	Gma12g00909	298	Gene3D	-	17	298	-	-
	Gma12g00909	298	PIRSF	EndGlu_transf	4	297	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Gma12g00909	298	CDD	GH16_XET	27	292	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Gma12g00909	298	Pfam	Glycosyl hydrolases family 16	34	209	IPR000757	GO:0004553\|GO:0005975
	Gma12g00909	298	PRINTS	Glycosyl hydrolase family 16 signature	61	79	IPR008264	GO:0004553\|GO:0005975
	Gma12g00909	298	PRINTS	Glycosyl hydrolase family 16 signature	119	132	IPR008264	GO:0004553\|GO:0005975
	Gma12g00909	298	PRINTS	Glycosyl hydrolase family 16 signature	137	154	IPR008264	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma12g00909	Gma-Chr12	9149941	9152364	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma12g00909	61	297	Glycoside Hydrolase	AT4G03210	74.684	9.65e-140	393

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma12g00909	K08235		-	gmx:100785982	605.905

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma12g00909	12	9149941	9152364	Gma06g02697	06	50634295	50636879	GST
	Gma12g00909	12	9149941	9152364	Gma13g02693	13	41624566	41626728	PCT
	Gma12g00909	12	9149941	9152364	Gma12g01864	12	39281149	39283282	PCT