Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01864 ATGTCCAAGATGTTGGGAGTGTTTGTGGGACTTTTGTTGGTGGGGTTGGCTGCCTCTGCCAAGTTTGATGAACTCTTCCAGCCCAGTTGGGCTATGGACCATTTCATCCATGAAGGAGAACTCCTCAAACTCAAACTTGATAACTATTCTGGTGCTGGATTTGGATCTAAGAGCAAATATATGTTTGGAAAAGTGACCATCCTGCTCAAGCTTGTGGAGGGTGACTCTGCTGGAACTGTCACTGCTTTCTATATGTCATCAGACGGCCCAACTCACAACGAATTTGATTTCGAGTTTCTGGGCAACACCACAGGTGAACCTTACTCAGTCCAAACCAACGTGTATGTGAATGGCGTTGGCAACAGGGAGCAGAGACTCAACCTCTGGTTCGACCCCACCAAGGACTTCCACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGTTTTCCTAGTGGATGAGACGCCAATAAGGGTGCACACGAATCTGGAACACAAGGGCATTCCCTTCCCGAAGGACCAAGCCATGGGCGTGTACAGCTCCATCTGGAACGCAGACGATTGGGCAACGCAGGGTGGTCGTGTGAAGACAGATTGGAGCCACGCACCCTTCGTTGCTACCTACAAGGACTTCCAAATTGACGCGTGCGAGTGCCCCGTGCCGGTGACGTCAGCAGATAGCGCTAAGAAATGTAGCAGCAGCGAGGACAACAAGTACTGGTGGGACCAACCAACGTTGTCTGAACTGAACTTGCACCAGAGCCACCAGCTTATGTGGGTTAGGGCTAACCATATGCTGTATGATTATTGCGCCGACACTGCTAGGTTCCCCGTTGTACCTGCTGAGTGTGTTCATCACCCTCACCATTCAAGAGAAACCAACTACCATTAA 891 0.5039 MSKMLGVFVGLLLVGLAASAKFDELFQPSWAMDHFIHEGELLKLKLDNYSGAGFGSKSKYMFGKVTILLKLVEGDSAGTVTAFYMSSDGPTHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPTKDFHTYSIFWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVATYKDFQIDACECPVPVTSADSAKKCSSSEDNKYWWDQPTLSELNLHQSHQLMWVRANHMLYDYCADTARFPVVPAECVHHPHHSRETNYH 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01864 296 CDD GH16_XET 17 283 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gma12g01864 296 Pfam Glycosyl hydrolases family 16 25 200 IPR000757 GO:0004553|GO:0005975
Gma12g01864 296 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 20 208 IPR000757 GO:0004553|GO:0005975
Gma12g01864 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 11 287 IPR044791 GO:0004553
Gma12g01864 296 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 236 283 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Gma12g01864 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 11 287 - -
Gma12g01864 296 PIRSF EndGlu_transf 1 288 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gma12g01864 296 Gene3D - 13 288 - -
Gma12g01864 296 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 287 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01864 Gma-Chr12 39281149 39283282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01864 52 288 Glycoside Hydrolase AT4G03210 78.481 1.99e-142 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01864 K08235 - gmx:100527891 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01864 12 39281149 39283282 Gma12g01864 12 39281149 39283282 ECH
Gma13g02693 13 41624566 41626728 Gma12g01864 12 39281149 39283282 GST
Gma12g00909 12 9149941 9152364 Gma12g01864 12 39281149 39283282 PCT
Gma06g02697 06 50634295 50636879 Gma12g01864 12 39281149 39283282 PCT