Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01287 ATGCCTTCTAGTCACTTGCTTCTTGAGGAACCTATTAGGATGGTCTCCATCCTTGAACCATCCAAGCCTAGTTTTTTCTCTGCAATGACAAAGATTGTTGGTACCCTGGGGCCTAAATCTAGATCCGTCGAAACTATTTCTGGTTGTCTCAAGGCTGGCATGTCTGTGGCTCGTTTTGACTTTTCATGGCATGACCCTGAGTACCACCAGGAGACTTTGGAGAATTTGAAGGCTGCTATCAAGAGTACTAAGAAGCTTTGTGCTGTTATGCTGGACACGGTGGGCGCAGAGATGCAGGTTGTTAACAAAAGTGAGAAAGCAATCTCACTTGAGGCAAATGGTCAGGTTGTTCTAACTCCCGATCAGGGACAAGAAGCCTCTTCAGAGATATTGCCTATCAATTTTGATGGACTGGCTAAGGCAGTGAAGAAGGGAGACACTATTTTTATTGGTCAATACTTGTTCACAGGAAGTGAAACTACTTCTGTATGGCTAGAGGTATCTGAAGTCAAAGGGCAAGATGTTGTTTGTATTATAAAGAACACAGCTACATTGGCTGGGTCATTGTTCACTTTGCATGCCTCTCAGATTCATATTGATTTGCCCACTCTCACTGAGAAAGACCAGGAGGTTATAAGCTCCTGGGGTGTTAAAAACAAAATTGATTTTCTGTCATTGTCATATACTCGACACGCCGAAGATGTTCGCCAGGCTCGTGAATTTCTTTCAAAGTTAGGTGATCTCAGCCAAACTCAAATTTTTGCAAAGATTGAAAATGTTGAGGGATTGACCCATTTTGATGAGATTCTACAAGAAGCTGATGGTATTATCCTTTCCCGTGGGAATTTGGGTATTGATCTTCCACCAGAGAAGGTTTTTTTATTTCAAAAATCTGCCCTTTACAAGTGTAATATGGCTGGGAAACCTGCTGTTCTTACACGTGTTGTGGATAGCATGACTGACAACTTGAGACCAACTCGTGCTGAAGCAACAGATGTCGCCAATGCTGTTTTAGATGGAAGTGATGCCATTCTTCTGGGTGCTGAGACTTTACGTGGGTTGTACCCTATTGAGACTATATCTACTGTTGGCAGAATTTGTTCAGAGGCTGAGAAAGTTTTCAATCAAGACCTTTATTTTAAAAGGACAGTCAAGTATGTTGGAGAACCCATGACTCACTTGGAATCTATTGCATCCTCTGCGGTACGAGCTGCAATTAAGGTGAAAGCATCTATTATAATTTGTTTTACTTCATCTGGAAGGGCTGCAAGATTGATTGCAAAGTATAGGCCAACAATGCCAGTACTATCTGTTGTGATCCCCCGACTTAAGACAAACCAGCTAAAGTGGAGCTTTAGTGGAGCTTTTGAGGCAAGACAATCACTTATTGTGAGAGGTCTCTTTCCTATGCTTGCAGATCCTCGACATCCTGCTGAATCAACAAGTGCAACAAATGAGTCTATTCTTAAGGTTGCCCTTGATCATGGAAAAGCATTGGGAGTTATTAAGTCACATGACCGGGTTGTCAAAATAAAAATAAAAGGGGAACTCTACATGATCAAAGTGGCAAAGCAACAATTACGAATTCGTCACTCGATAACTTGGTCAATTCTAAATTGA 1620 0.4173 MPSSHLLLEEPIRMVSILEPSKPSFFSAMTKIVGTLGPKSRSVETISGCLKAGMSVARFDFSWHDPEYHQETLENLKAAIKSTKKLCAVMLDTVGAEMQVVNKSEKAISLEANGQVVLTPDQGQEASSEILPINFDGLAKAVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGQDVVCIIKNTATLAGSLFTLHASQIHIDLPTLTEKDQEVISSWGVKNKIDFLSLSYTRHAEDVRQAREFLSKLGDLSQTQIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKSALYKCNMAGKPAVLTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPIETISTVGRICSEAEKVFNQDLYFKRTVKYVGEPMTHLESIASSAVRAAIKVKASIIICFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGLFPMLADPRHPAESTSATNESILKVALDHGKALGVIKSHDRVVKIKIKGELYMIKVAKQQLRIRHSITWSILN 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01287 539 Pfam Pyruvate kinase, alpha/beta domain 395 511 IPR015795 -
Gma13g01287 539 Gene3D - 371 511 IPR036918 -
Gma13g01287 539 SUPERFAMILY PK beta-barrel domain-like 103 186 IPR011037 -
Gma13g01287 539 Gene3D - 30 370 IPR040442 -
Gma13g01287 539 PRINTS Pyruvate kinase family signature 348 364 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma13g01287 539 PRINTS Pyruvate kinase family signature 85 101 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma13g01287 539 PRINTS Pyruvate kinase family signature 253 279 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma13g01287 539 PRINTS Pyruvate kinase family signature 280 304 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma13g01287 539 PRINTS Pyruvate kinase family signature 221 235 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma13g01287 539 PRINTS Pyruvate kinase family signature 329 347 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma13g01287 539 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 7 375 IPR015813 GO:0003824
Gma13g01287 539 Pfam Pyruvate kinase, barrel domain 30 375 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma13g01287 539 Gene3D - 96 202 IPR015806 GO:0004743|GO:0006096
Gma13g01287 539 PANTHER PYRUVATE KINASE 3 522 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma13g01287 539 TIGRFAM pyruv_kin: pyruvate kinase 30 513 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma13g01287 539 PANTHER PYRUVATE KINASE 3 522 - -
Gma13g01287 539 SUPERFAMILY PK C-terminal domain-like 358 511 IPR036918 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01287 Gma-Chr13 27266957 27273974 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01287 K00873 - gmx:100802271 991.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01287 13 27266957 27273974 Gma13g01287 13 27266957 27273974 ECH
Gma10g00597 10 6289380 6295566 Gma13g01287 13 27266957 27273974 GST
Gma19g01796 19 47184633 47191264 Gma13g01287 13 27266957 27273974 PCT
Gma03g01744 03 43525232 43531835 Gma13g01287 13 27266957 27273974 PCT
Gma13g01287 13 27266957 27273974 Gma19g01796 19 47184633 47191264 PCT
Gma13g01287 13 27266957 27273974 Gma03g01744 03 43525232 43531835 PCT