Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01274 ATGCGGTGTTGCATTCCGACGTTGTTGCTCGTAACCACCGTACTATTGTCGGCGGTGCACGGAGTTTTCCTCCCTCTGGAGCGGAGCATTCCTCCGACGGGCCACCGCGTGGAGGTGGCGGCGCTGAAAGCCCGCGACAGGGCCCGCCACGCCCGCATGTTGCGCGGCGTCGCCGGCGGCGTCGTCGACTTCTCCGTCCAAGGCACCTCCGATCCAAACTCCGTTGGATTGTATTATACGAAAGTGAAGATGGGAACTCCTCCTAAGGAGTTTAACGTTCAGATTGATACGGGAAGTGACATATTGTGGGTGAATTGCAATACTTGCAGTAATTGCCCTCAGTCTAGTCAACTAGGGATTGAGCTTAATTTCTTTGACACGGTTGGCTCATCCACAGCAGCGTTGATTCCCTGCTCGGACCCAATATGCACTTCCAGGGTCCAGGGTGCTGCTGCTGAATGCTCTCCGAGGGTTAATCAGTGCAGCTACACCTTTCAGTATGGAGATGGGAGTGGGACATCGGGTTATTATGTTTCGGATGCAATGTATTTTAGCTTGATCATGGGGCAGCCTCCGGCAGTAAACTCTTCGGCTACCATTGTTTTTGGGTGTAGCATCAGTCAGTCTGGAGATTTGACTAAGACAGATAAAGCAGTTGATGGGATTTTTGGGTTTGGCCCTGGTCCTCTATCTGTTGTATCACAATTGTCATCTCGAGGAATAACACCCAAAGTTTTCTCTCATTGCTTAAAGGGAGATGGCGATGGAGGAGGTGTTCTAGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGTCCTCTTGTACCATCACAGCCTCATTACAACTTGAATCTTCAGAGTATTGCTGTCAATGGACAACTTCTCCCAATTAATCCAGCTGTATTTTCTATATCTAACAACCGAGGAGGGACTATAGTTGACTGTGGTACAACATTGGCATATCTTATTCAAGAAGCTTATGATCCTCTTGTCACTGCTATAAATACTGCCGTGTCACAATCTGCCAGGCAAACAAATTCAAAAGGAAACCAGTGTTATCTGGTCTCAACCAGTATAGGTGACATTTTTCCTTCGGTAAGTTTAAACTTTGAGGGTGGAGCATCAATGGTTTTAAAACCAGAGCAGTACCTTATGCATAACGGTTACCTTGATGGTGCTGAAATGTGGTGCATCGGTTTCCAGAAATTTCAGGAGGGAGCCTCAATTTTAGGAGATCTTGTCCTAAAAGATAAGATAGTTGTGTATGACATAGCTCAACAACGAATTGGATGGGCTAACTATGACTGTTCTTTGTCTGTAAATGTTTCGGTGACTACAAGTAAGGACGAGTACATCAATGCGGGGCAGCTTCATGTCAGCAGCTCCGAAATACACATTCTTTCTAAGTTACTACCTGTAAGCTTTGTGGCTCTCTCTATGTACATAATGTTGGTATGA 1461 0.4627 MRCCIPTLLLVTTVLLSAVHGVFLPLERSIPPTGHRVEVAALKARDRARHARMLRGVAGGVVDFSVQGTSDPNSVGLYYTKVKMGTPPKEFNVQIDTGSDILWVNCNTCSNCPQSSQLGIELNFFDTVGSSTAALIPCSDPICTSRVQGAAAECSPRVNQCSYTFQYGDGSGTSGYYVSDAMYFSLIMGQPPAVNSSATIVFGCSISQSGDLTKTDKAVDGIFGFGPGPLSVVSQLSSRGITPKVFSHCLKGDGDGGGVLVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQLLPINPAVFSISNNRGGTIVDCGTTLAYLIQEAYDPLVTAINTAVSQSARQTNSKGNQCYLVSTSIGDIFPSVSLNFEGGASMVLKPEQYLMHNGYLDGAEMWCIGFQKFQEGASILGDLVLKDKIVVYDIAQQRIGWANYDCSLSVNVSVTTSKDEYINAGQLHVSSSEIHILSKLLPVSFVALSMYIMLV 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01274 486 CDD pepsin_A_like_plant 78 437 IPR034161 -
Gma13g01274 486 PANTHER ASPARTYL PROTEASES 7 455 IPR001461 GO:0004190|GO:0006508
Gma13g01274 486 Gene3D Acid Proteases 265 444 IPR021109 -
Gma13g01274 486 Gene3D Acid Proteases 62 264 IPR021109 -
Gma13g01274 486 SUPERFAMILY Acid proteases 75 440 IPR021109 -
Gma13g01274 486 Pfam Xylanase inhibitor N-terminal 78 263 IPR032861 -
Gma13g01274 486 Pfam Xylanase inhibitor C-terminal 281 433 IPR032799 -
Gma13g01274 486 ProSiteProfiles Peptidase family A1 domain profile. 78 433 IPR033121 -
Gma13g01274 486 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 7 455 - -
Gma13g01274 486 PRINTS Pepsin (A1) aspartic protease family signature 84 104 IPR001461 GO:0004190|GO:0006508
Gma13g01274 486 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190|GO:0006508
Gma13g01274 486 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01274 Gma-Chr13 27097357 27105195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01274 62 438 Miscellaneous Gene Families AT1G44130 28.856 2.65e-43 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01274 - - gmx:100820394 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01274 13 27097357 27105195 Gma13g01274 13 27097357 27105195 ECH
Gma10g00581 10 6093698 6100146 Gma13g01274 13 27097357 27105195 GST
Gma03g01731 03 43422233 43428090 Gma13g01274 13 27097357 27105195 PCT
Gma13g01274 13 27097357 27105195 Gma03g01731 03 43422233 43428090 PCT