Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01731 ATGCGGGGTCGTGTTCCCCTGTTTCTGGCGTTAGCCACCTTGGCAGCGGCGACGACGGTGTCGTGCGGCGGTTTGGCGGGGACTTTTCTTCCTCTGGAACGGGCCATTCCTCTGAACCAGCAAGTGGAGCTGGAGGCGCTGAGAGCTCGCGACAGAGCACGCCACGGTCGAATCTTGCAAGGTGTCGTTGGTGGCGTCGTCGACTTCTCCGTCCAAGGAACCTCCGATCCTTACTTCGTTGGGTACGGGTTGTATTTTACCAAAGTGAAGTTGGGATCTCCTGCGAAAGATTTTTACGTTCAGATTGATACTGGAAGTGACATCTTGTGGATAAATTGCATTACTTGCAGTAATTGCCCTCATTCTAGTGGGTTGGGGATTGAACTCGATTTCTTTGACACAGCCGGCTCGTCCACTGCTGCGCTTGTTTCCTGTGCAGACCCGATATGTTCTTATGCTGTTCAAACTGCGACAAGTGGATGCTCTTCTCAGGCTAATCAGTGCAGCTATACTTTTCAGTATGGGGATGGAAGCGGGACTACTGGTTATTATGTTTCTGATACAATGTATTTTGACACGGTCCTCCTTGGACAGTCTATGGTTGCTAATTCTTCATCCACCATCGTTTTTGGGTGTAGCACCTACCAGTCTGGGGATTTGACCAAGACAGATAAAGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGTGCTCTGTCTGTTATATCACAATTGTCATCACGGGGTGTAACACCCAAAGTGTTCTCTCATTGCTTAAAAGGAGGAGAGAATGGAGGAGGTGTGCTAGTTCTTGGTGAAATTTTGGAGCCAAGTATTGTTTATAGTCCTCTTGTCCCATCACTGCCTCATTACAACTTAAATCTTCAGAGCATTGCTGTCAATGGACAACTTCTCCCAATTGATTCAAATGTATTTGCAACAACTAACAATCAAGGAACGATAGTTGACTCTGGCACAACATTGGCATACCTTGTTCAAGAAGCTTACAATCCTTTTGTTGATGCTATAACTGCTGCTGTGTCACAGTTTTCGAAACCCATTATTTCAAAAGGAAACCAGTGTTATCTGGTATCAAACAGCGTAGGTGATATATTTCCTCAAGTCAGTTTAAACTTCATGGGTGGAGCATCTATGGTTTTGAATCCAGAACATTACCTCATGCATTATGGTTTCCTTGATAGTGCTGCAATGTGGTGTATTGGCTTCCAAAAAGTGGAGCGGGGATTCACAATTTTAGGAGATCTTGTCCTAAAAGATAAGATATTTGTATATGACTTAGCTAATCAACGAATTGGATGGGCCGATTATAATTGTTCCTTGGCTGTAAACGTTTCTCTGGCTACAAGCAAGAGCAAGGATGCATACATCAATTCAGGACAGATGAGTGTGAGCTGCTCCCTCATAGGCACTTTCTCCGAGTTGCTAGCTGTAGGCATTGTTGCTTTCCTTGTGCACATAATAGTTTTCATGGAGTCCCAATTTTTGTAA 1506 0.4489 MRGRVPLFLALATLAAATTVSCGGLAGTFLPLERAIPLNQQVELEALRARDRARHGRILQGVVGGVVDFSVQGTSDPYFVGYGLYFTKVKLGSPAKDFYVQIDTGSDILWINCITCSNCPHSSGLGIELDFFDTAGSSTAALVSCADPICSYAVQTATSGCSSQANQCSYTFQYGDGSGTTGYYVSDTMYFDTVLLGQSMVANSSSTIVFGCSTYQSGDLTKTDKAVDGIFGFGPGALSVISQLSSRGVTPKVFSHCLKGGENGGGVLVLGEILEPSIVYSPLVPSLPHYNLNLQSIAVNGQLLPIDSNVFATTNNQGTIVDSGTTLAYLVQEAYNPFVDAITAAVSQFSKPIISKGNQCYLVSNSVGDIFPQVSLNFMGGASMVLNPEHYLMHYGFLDSAAMWCIGFQKVERGFTILGDLVLKDKIFVYDLANQRIGWADYNCSLAVNVSLATSKSKDAYINSGQMSVSCSLIGTFSELLAVGIVAFLVHIIVFMESQFL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01731 501 Pfam Xylanase inhibitor C-terminal 289 440 IPR032799 -
Gma03g01731 501 Gene3D Acid Proteases 273 450 IPR021109 -
Gma03g01731 501 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Gma03g01731 501 PRINTS Pepsin (A1) aspartic protease family signature 319 330 IPR001461 GO:0004190|GO:0006508
Gma03g01731 501 PRINTS Pepsin (A1) aspartic protease family signature 416 431 IPR001461 GO:0004190|GO:0006508
Gma03g01731 501 Gene3D Acid Proteases 69 272 IPR021109 -
Gma03g01731 501 SUPERFAMILY Acid proteases 80 446 IPR021109 -
Gma03g01731 501 Pfam Xylanase inhibitor N-terminal 85 271 IPR032861 -
Gma03g01731 501 CDD pepsin_A_like_plant 85 444 IPR034161 -
Gma03g01731 501 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 463 - -
Gma03g01731 501 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Gma03g01731 501 ProSiteProfiles Peptidase family A1 domain profile. 85 440 IPR033121 -
Gma03g01731 501 PANTHER ASPARTYL PROTEASES 5 463 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01731 Gma-Chr3 43422233 43428090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01731 83 445 Miscellaneous Gene Families AT1G44130 27.344 9.85e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01731 - - gmx:100804140 958.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01731 03 43422233 43428090 Gma03g01731 03 43422233 43428090 ECH
Gma03g01731 03 43422233 43428090 Gma10g00581 10 6093698 6100146 PCT
Gma03g01731 03 43422233 43428090 Gma13g01274 13 27097357 27105195 PCT
Gma10g00581 10 6093698 6100146 Gma03g01731 03 43422233 43428090 PCT
Gma13g01274 13 27097357 27105195 Gma03g01731 03 43422233 43428090 PCT