Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01229 ATGGAATTCTCAAGGACCATGTTCTGTTCTTCTCCACCGTTCCCTCCAAGAACTCATCACCCTTGGAACACTCTTCCCTTGAGTTCTTCTACTTCCGTTTTGATGCTTCGCGAACAAGCTTCCCCTACAGTTGCCTCTTGGTCTTCTAATTTTTCAGCACAGAATTTTCCTGCCTCAGTTCTTTTACAAGAGCAGCGTGATGAATATAGGCCTCTTCTGCACATGTCTAAGGAAGACAAGACATCGCAGGCAATGTTAAGTACAAGGCAGATGGATACAGTCATGGTTCATGAAGAGAATAACACTGAAAATGCTGATCAGGTAGTGCTTGACTTTAGGAAGCACCTGCATTACTGGCCTCATTTACAGAACTTATTAGCTTCCTCACAAACAGGAGAAATTTCTGCTTCTTCAACTCTACAGCAAGTTTCTTCTGACTTGGATAGGCATACAAATGGTGTGCAATGTAATAGAGTTTCTCTTGCTAAGAAAGCTTTGTCTACCTCGAAACAAGGATCCTCAGTAGTTGAAGACTTGAAATCAATTAAAGCTGATGATGATTCAATTCCTTTTGGTCTGGCCTCTACTGGCTTGGCTGATCCTTCAATTGGAAGAAATAAAACTGTGAGGTCAACACGGCTTTTAGAGAGACGATCAAAGCAAAGAAAAGTACCTAAGTCGAAAGTTATAGACGACGAAACCTACCTTGCAAGAAAGGATGACGCACATGAAAAGCTACGTGTAGAAAAGAAGAAAAATGAAGAACTTGATCAAAATGATCCCCTGTGCTTTTTCTTGCGGGGTCCCGAAACAAAACAACTTTTGACACTTGAACAAGAATCTCAACTGATTTCTCAGATACAGGACTTGTTGAGATTGGAAGAAGTGAAGACCAAGCTTCAATCTCAATTTGGAAGGGAACCAACTATGGCTGAATGGGCTGAGGGTGTGGGACTTAATTGTCGAATGCTGCATGCACAGCTTCGTTCTGGTAGCAGAAGCAGAGAAAAGCTTATTCAAGCAAATTTACGTATGGTAGTCCATGTTGCCAAAAGTTATCAGGGGCGTGGTCTCAGCCTTCAGGACTTATTACAGGAGGGAAGTATGGGTCTTATGAAGAGTGTTGAAAAATTCAATCCCCTAGTTGGTAGTCGATTTGGTAATTATGCATTCTGGTGGATAAGGCAAGCAATAAGGAAGGCGGTGTTTCGACATTCCAGGACAATCCGTCTACCGGAGAAGGTATTTATTCTATTGGGCAAGGTAATGGAGGCAAAGAAATTGTACATTCAGGAAGGAAATCTTCACCCAACTAAAGAAGAATTAGCAAGAAGGGTAGGAGTTACAGTAGAAAAGATTGACAAATTACTATTTTCTGCAAGAATTCCCATTTCAATGCAGCAAACTGTGTGGGCTGACCAAAATACAACTTTCCAGGAGATTACTGCAGACCCGACAGTTGAGGCCACAGACGTGAGTGTTGAAAAACAGCTTATGAGGCAGCATGTTCTCAATGTCCTAAGTATCTTACATCCCAAAGAGAGGAGAATTATCCGGTTGAGATATGGTTTTGAGGATGGTGAACAGAAGTCTTTATCAGAAATTGGAGACATATTTGGTTTGTCTAAGGAAAGGGTTCGTCAATTGGAGATCCGAGCACTATACAAGCTGAAGAAGTGCCTTGTCAAACAAGGACTTGATGCTTATGTAGACTTGCTTCTATAG 1725 0.4162 MEFSRTMFCSSPPFPPRTHHPWNTLPLSSSTSVLMLREQASPTVASWSSNFSAQNFPASVLLQEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVMVHEENNTENADQVVLDFRKHLHYWPHLQNLLASSQTGEISASSTLQQVSSDLDRHTNGVQCNRVSLAKKALSTSKQGSSVVEDLKSIKADDDSIPFGLASTGLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLARKDDAHEKLRVEKKKNEELDQNDPLCFFLRGPETKQLLTLEQESQLISQIQDLLRLEEVKTKLQSQFGREPTMAEWAEGVGLNCRMLHAQLRSGSRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLVGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTTFQEITADPTVEATDVSVEKQLMRQHVLNVLSILHPKERRIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01229 574 Pfam Sigma-70, region 4 507 559 IPR007630 GO:0003700|GO:0006352|GO:0006355
Gma13g01229 574 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 4 574 - -
Gma13g01229 574 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 411 484 IPR013324 -
Gma13g01229 574 CDD Sigma70_r4 500 558 - -
Gma13g01229 574 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 4 574 - -
Gma13g01229 574 Coils Coil 239 259 - -
Gma13g01229 574 PIRSF Sigma_factor_SigC 1 574 IPR016262 -
Gma13g01229 574 Gene3D - 117 407 - -
Gma13g01229 574 ProSitePatterns Sigma-70 factors family signature 1. 362 375 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma13g01229 574 Pfam Sigma-70 region 3 419 487 IPR007624 GO:0003700|GO:0006352|GO:0006355
Gma13g01229 574 Pfam Sigma-70 region 2 338 407 IPR007627 GO:0003700|GO:0006352|GO:0006355
Gma13g01229 574 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 471 570 IPR013324 -
Gma13g01229 574 PRINTS Major sigma-70 factor signature 362 375 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma13g01229 574 PRINTS Major sigma-70 factor signature 386 394 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma13g01229 574 PRINTS Major sigma-70 factor signature 510 522 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma13g01229 574 PRINTS Major sigma-70 factor signature 531 546 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma13g01229 574 PRINTS Major sigma-70 factor signature 546 557 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma13g01229 574 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 258 408 IPR013325 GO:0003700|GO:0006352|GO:0006355
Gma13g01229 574 ProSitePatterns Sigma-70 factors family signature 2. 531 557 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma13g01229 574 Gene3D - 411 488 IPR036388 -
Gma13g01229 574 Gene3D - 493 573 IPR036388 -
Gma13g01229 574 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 334 561 IPR014284 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01229 Gma-Chr13 26596049 26600945 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01229 - - gmx:100306289 1127.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00520 10 5296871 5302301 Gma13g01229 13 26596049 26600945 GST
Gma19g01728 19 46587323 46592325 Gma13g01229 13 26596049 26600945 PCT
Gma03g01681 03 42939145 42944364 Gma13g01229 13 26596049 26600945 PCT