Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00520 ATGGAATTCGCCAGGACCATGTTCTGTTCTTCTCCACCGTTCCCTCCAAGAACTCATCACCCTTGGAGCACTCTCCCCTCGTCCTCTTCTACTTCTTCCGTTTTGATGCTTCACGAACAAGCTTCCCCTACAGTTGCCTCTTGGTCTTCTAATTTTTCAGCACAGAATTTTCCTGCCTCAGTTCTTTTACCAGAGCAGCGTGATGAATATAGGCCTCTTCTGCACATGTCTAAGGAAGACAAGACATCACAGGCAATGTTAAGTACAAGGCAGATGGATACAGTCACGGTTCATGAAGAGAATAACACGGAAAATGCTGATCAGGTAGTGCTTGACTTTAGGAAGCACCTGCATCACTGGCCTAATTTACAGTACTTATTAACTTCCTCACAAATAGGGGAAGTTGCTGCTTCTTCAACTTTAGAGCATGTTTCTGTTGACTTGGAGAGGCGTCCAAATGGTGTGCAATTTAATGGAGTTTCTCTTGCTAAGAAAGCTTTGTCTACCTCGAAACAAGAATCCTCAGTAGTTGAAGACTTGAAATCAATTAAAGCTGATGATGATTCAATTCCTTTTGGTCTGGCCTCTACTAGCTTGGCTGATCCTTCAATTGGAAGAAATAAAACTGTGAGGTCAACACGGCTTCTAGAGAGACGATCAAAACAAAGAAAAGTACCTAAGTCGAAAGTTATAGACGATGAAACCTACCTTGCAAGAAAGGATGATGCACAAGAAAAGCTACGTGCAGAAAAGAAGAAAAATGAAGAACTTGATCAAGATGATCCCCTGCGCTTGTTCTTGTGGGGTCCCGAAACAAAACAACTTTTGACACTTGAACAAGAATCTCAACTGATATCTCAGATACAGGACTTATTGAGATTGGAAGAAGTGAAGACCAATCTTCAATCTCAATTTGGAAGGGAACCAACTATGGCTGAATGGGCAGAGGGTGCAGGACTTAATTGTCGATTGCTGCAATCACAGCTTCATTCTGGTAACAGAAGCAGAGAAAAGCTTATTCAAGCAAATTTACGCATGGTAGTCCATGTTGCCAAAAGTTATCAGGGGCGTGGTCTCAGCCTTCAGGACTTACTACAGGAGGGAAGTATGGGTCTTATGAAGAGTGTTGAAAAATTCAATCCCCTAGCCGGTAGTCGATTTGGTAATTATGCATTCTGGTGGATAAGGCAAGCAATAAGGAAGGCAGTGTTTCGACATTCCAGGACAATCCGTCTACCGGAGAAGGTATTTATCCTATTGGGCAAGGTAATGGAGGCTAAGAAATTGTACATTCAGGAAGGAAACCTTCACCCAACTAAAGAAGAATTAGCAAGAAGGGTAGGAGTTACTGTAGAAAAGATTGACAAATTACTATTTTCTGCAAGAATTCCAATTTCAATGCAGCAAACTGTGTGGGCTGACCAAAATACAACTTTCCAGGAGATTACTGCAGACCCCACTGTTGAGGCCACAGATGTGACTGTCGAAAAACAGCTTATGAGAAGGCATGTTCTCAATGTCCTAAGTGTCTTACACCCAAAAGAGAGGAGAATTATCCGGTTAAGATATGGTTTTGAGGATGGTGAACAGAAATCTTTATCAGAGATCGGAGACATATTTGGTTTGTCTAAGGAAAGGGTTCGTCAATTGGAGATCCGAGCACTATACAAGCTGAAGAAGTGCCTTGTCAAACAAGGACTTGATGCTTATGTAGACTTGCTTCTATAG 1728 0.4207 MEFARTMFCSSPPFPPRTHHPWSTLPSSSSTSSVLMLHEQASPTVASWSSNFSAQNFPASVLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVTVHEENNTENADQVVLDFRKHLHHWPNLQYLLTSSQIGEVAASSTLEHVSVDLERRPNGVQFNGVSLAKKALSTSKQESSVVEDLKSIKADDDSIPFGLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTTFQEITADPTVEATDVTVEKQLMRRHVLNVLSVLHPKERRIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00520 575 Pfam Sigma-70, region 4 507 560 IPR007630 GO:0003700|GO:0006352|GO:0006355
Gma10g00520 575 PRINTS Major sigma-70 factor signature 363 376 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma10g00520 575 PRINTS Major sigma-70 factor signature 387 395 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma10g00520 575 PRINTS Major sigma-70 factor signature 511 523 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma10g00520 575 PRINTS Major sigma-70 factor signature 532 547 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma10g00520 575 PRINTS Major sigma-70 factor signature 547 558 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma10g00520 575 Pfam Sigma-70 region 3 420 488 IPR007624 GO:0003700|GO:0006352|GO:0006355
Gma10g00520 575 ProSitePatterns Sigma-70 factors family signature 2. 532 558 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma10g00520 575 ProSitePatterns Sigma-70 factors family signature 1. 363 376 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma10g00520 575 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 472 571 IPR013324 -
Gma10g00520 575 Gene3D - 412 489 IPR036388 -
Gma10g00520 575 Pfam Sigma-70 region 2 339 408 IPR007627 GO:0003700|GO:0006352|GO:0006355
Gma10g00520 575 CDD Sigma70_r4 501 559 - -
Gma10g00520 575 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 259 409 IPR013325 GO:0003700|GO:0006352|GO:0006355
Gma10g00520 575 Coils Coil 240 260 - -
Gma10g00520 575 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 412 485 IPR013324 -
Gma10g00520 575 Gene3D - 256 408 - -
Gma10g00520 575 Gene3D - 494 574 IPR036388 -
Gma10g00520 575 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 335 562 IPR014284 GO:0003700|GO:0006352|GO:0006355
Gma10g00520 575 PIRSF Sigma_factor_SigC 1 575 IPR016262 -
Gma10g00520 575 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 4 575 - -
Gma10g00520 575 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 4 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00520 Gma-Chr10 5296871 5302301 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00520 - - gmx:100778636 1098.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00520 10 5296871 5302301 Gma13g01229 13 26596049 26600945 GST
Gma19g01728 19 46587323 46592325 Gma10g00520 10 5296871 5302301 PCT
Gma03g01681 03 42939145 42944364 Gma10g00520 10 5296871 5302301 PCT
Gma10g00520 10 5296871 5302301 Gma19g01728 19 46587323 46592325 PCT
Gma10g00520 10 5296871 5302301 Gma03g01681 03 42939145 42944364 PCT