Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01681 ATGTTTTCTTCGTCTCCACCGTTTCCTTCTTCTTCTTCGCCTTCAGTTACGATGCTTCATGAACAAGCTGCTCCTGCAGTTGCATCCTGGTCTTCTAGTTCTGCAGCTCAGCATTTTCCTACCTCAGTTCTTTTACAAGAGCAGCGTGATGAGTATAAGCCCTTACTGCACGTGCATAATAAGGAGACAACACTAAATACAAGGCAGATGGATATGACCTCAGTTCATGAAAAAGGTAACATGAGCAATGGTGATCAGTTAGTGCATGACTTTGTGCAGCAGTTGCATCTCCGGTCTCATTTACAGAACTTATTGACTTGTTCTCCGACAAGGGGAATTGCTGCTTCTTCGATTCTGCAACCTGTTGATATTGATTCTGAGTGGCCTGCAGATGGTCTGCCAGGGAATGCCATTTCTCTTGCACAGCAAGCTTTGTCTGCCTCAAAGCAAGCAGTTTCAACAACTGGAGAGATGAAATTGATTGAAATCGATGATGATGATCCACTTCCTTTTGGTCTGGCCTCCACAAGTTTGGCTAACTCTTCACTAAAAAAGAATAAAGTTGTGAGGTCGACACGGATTATAGAAAGAAGGTCTAAACAGAGAAAATCATCGAAGTCAAAAATTATTGACGAAGAAAGTTACCTTGAAAGAAAGTCTGATGTACAGAGAAGGTTACGTTTAGAGAAGAAGTTAAAAGAAGGGTATGATCAAAATGACCCCCTGCGCTTGTTCCTGTCGGGTCCTGAATCAAGGCAACTTTTGACCCGTGAAGAAGAGTCACTATTGATTACTCAGTTACAGGATTTATCAAGATTCGAAGAAGTAAAGATCAGGCTTCAATCTCAGTTAAGGCGGGAACCAACTTTGGCTGAATGGGCTGATGCTGTGGGCCTTAGTTGTTATACCCTGCAGACACAGCTTCATTGTGCTAACAGAAGCAAAGAAAAGCTGTTTCATGCCAATTTACGCATGGTAGTTCACATTGCTAAACATTATCAGGGACGTGGTCTCAGCCTTCAGGACTTATTTCAGGAGGGAAGTACTGGTCTTATGAAGAGCATCCAAAAGTTTAAACCTGAAGCTGGTTGCCGGTTTGGTACTTATGCATACTGGTGGATAAGGCATGCAATAAGGAAGGCTATATTTCTACATTCCAGGACAATCCGTTTGCCGGAGAATTTATATACCCTTTTGGGCAAGCTCATAGAAGCAAAGAAATCATACATTCAGGAAGGAAATCTTCACCCCACCAAAGAAGAATTAGCAAGAAGGGTAGGAATTACAGTAGAAAAGTTGGACAATTTGCTATTTGCTTCAAGAAATCCAATTTCGATGCAGCAAACTTTGTGGGTGGACCAAGATACAACTTTCCAGGAGATTACTGCAGACTCAGCAATTGAGATCCCAGGTGTGACTGTCTCAAAACAGCTAATGAGGAGGCACGTGCACAACCTCCTAAATATCTTAAGCCCAAAAGAAAAGGGCATAATCAGGCTAAGATTTGGTATTGAGGATGGCAAGGAGAAAACATTGTCAGATATTGGCAAGGTGTTTGGTTTGACCAAGGAGAGAGTCCGACAGTTGGAGTGCCGAGCATTGTCGAAGCTCAAGCAGTGTCTCGAAAGTCAAGGACTTGATGCATACATAGACTTGCTTGTATAG 1665 0.4258 MFSSSPPFPSSSSPSVTMLHEQAAPAVASWSSSSAAQHFPTSVLLQEQRDEYKPLLHVHNKETTLNTRQMDMTSVHEKGNMSNGDQLVHDFVQQLHLRSHLQNLLTCSPTRGIAASSILQPVDIDSEWPADGLPGNAISLAQQALSASKQAVSTTGEMKLIEIDDDDPLPFGLASTSLANSSLKKNKVVRSTRIIERRSKQRKSSKSKIIDEESYLERKSDVQRRLRLEKKLKEGYDQNDPLRLFLSGPESRQLLTREEESLLITQLQDLSRFEEVKIRLQSQLRREPTLAEWADAVGLSCYTLQTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTGLMKSIQKFKPEAGCRFGTYAYWWIRHAIRKAIFLHSRTIRLPENLYTLLGKLIEAKKSYIQEGNLHPTKEELARRVGITVEKLDNLLFASRNPISMQQTLWVDQDTTFQEITADSAIEIPGVTVSKQLMRRHVHNLLNILSPKEKGIIRLRFGIEDGKEKTLSDIGKVFGLTKERVRQLECRALSKLKQCLESQGLDAYIDLLV 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01681 554 Pfam Sigma-70 region 3 399 468 IPR007624 GO:0003700|GO:0006352|GO:0006355
Gma03g01681 554 CDD Sigma70_r4 480 538 - -
Gma03g01681 554 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 8 554 - -
Gma03g01681 554 ProSitePatterns Sigma-70 factors family signature 2. 511 537 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma03g01681 554 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 8 554 - -
Gma03g01681 554 Gene3D - 473 553 IPR036388 -
Gma03g01681 554 PRINTS Major sigma-70 factor signature 342 355 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma03g01681 554 PRINTS Major sigma-70 factor signature 366 374 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma03g01681 554 PRINTS Major sigma-70 factor signature 490 502 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma03g01681 554 PRINTS Major sigma-70 factor signature 511 526 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma03g01681 554 PRINTS Major sigma-70 factor signature 526 537 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma03g01681 554 Pfam Sigma-70 region 2 318 382 IPR007627 GO:0003700|GO:0006352|GO:0006355
Gma03g01681 554 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 238 388 IPR013325 GO:0003700|GO:0006352|GO:0006355
Gma03g01681 554 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 452 550 IPR013324 -
Gma03g01681 554 Gene3D - 235 387 - -
Gma03g01681 554 Gene3D - 391 468 IPR036388 -
Gma03g01681 554 Pfam Sigma-70, region 4 486 539 IPR007630 GO:0003700|GO:0006352|GO:0006355
Gma03g01681 554 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 391 464 IPR013324 -
Gma03g01681 554 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 316 541 IPR014284 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01681 Gma-Chr3 42939145 42944364 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01681 - - gmx:100815699 1025.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01681 03 42939145 42944364 Gma03g01681 03 42939145 42944364 ECH
Gma19g01728 19 46587323 46592325 Gma03g01681 03 42939145 42944364 GST
Gma03g01681 03 42939145 42944364 Gma10g00520 10 5296871 5302301 PCT
Gma03g01681 03 42939145 42944364 Gma13g01229 13 26596049 26600945 PCT
Gma10g00520 10 5296871 5302301 Gma03g01681 03 42939145 42944364 PCT