Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00839 ATGGGTTCACGGGTTCTAATGGAGAATTTACCAAGGGGGAATTTTTATACCCTGCTGTTGGTTTTGTGGGTTTGTGCAGTTACAGCCTCTGTGACTTATGATCACAAAGCCATTGTTGTTAATGGCCAGAGAAGAATTTTGATTTCTGGTTCCATTCACTACCCAAGAAGCACACCAGAGATGTGGCCAGACCTTATTCAAAAGGCCAAAGATGGAGGCTTAGATGTTATCCAAACCTACGTGTTTTGGAATGGACATGAGCCTTCTCCAGGAAAGTATTATTTCGAGGATAGGTACGACTTGGTTAAGTTCATCAAGCTGGTGCAGCAAGCTGGCCTTTCTGTTCATCTCCGCATTGGTCCCTACATATGTGCTGAATGGAACTTTGGGGGGTTTCCTGTTTGGCTCAAGTATGTTCCGGATATTGCTTTCAGAACAGACAATGAACCTTTCAAGGCAGCAATGCAAAAATTTACTGAGAAGATTGTGAGCATGATGAAGGCGGAGAAATTGTTCCAGACGCAGGGAGGTCCAATAATTATGTCGCAGATAGAAAACGAATATGGAACAGTGGAGTGGGAAATTGGTGCCCCAGGAAAAGCTTATACCAAATGGTTTTCTCAAATGGCTGTGGGTTTAGATACTGGTGTCCCCTGGATTATGTGCAAGCAACAAGATACTCCGGATCCTATTATTGACACCTGCAATGGATACTACTGCGAAAACTTTACTCCCAACAAGAAATACAAACCCAAAATGTGGACAGAGAACTGGACTGGCTGGTACACTGAGTTTGGAGGCGCGGTCCCTCGTAGACCTGCAGAAGACATGGCCTTCTCAGTTGCAAGATTCGTACAGAATGGTGGTTCATTTGTTAATTATTATATGTACCATGGAGGAACTAACTTTGATCGGACATCCAGTGGCCTCTTCATTGCCACCAGCTATGACTATGACGGTCCTATTGATGAATACGGACTTCTAAATGAACCAAAATGGGGTCATCTAAGAGATTTGCATAAAGCAATAAAGCTATGTGAGCCAGCTTTAGTGTCTGTAGATCCCACAGTGACATGGCCAGGAAATAACCTGGAGGTACATGTGTTCAAGACTTCTGGTGCTTGTGCTGCATTCCTTGCAAACTATGACACCAAATCTTCCGCAGCAGTTAAATTTGGAAATGGACAATATGACCTACCACCTTGGTCTATCAGCATCCTTCCTGACTGCAAAACTGCAGTTTTCAACACAGCGAGGCTTGGTGCTCAAAGCTCTCTGATGAAGATGACTGCCGTAAACAGTGCATTTGATTGGCAGTCATACAATGAAGAGGCTGCATCGTCCAATGAGGATGATTCCTTGACAGCATATGCACTCTGGGAGCAGATTAATGTCACCCGAGATTCTACAGATTATTTGTGGTATATGACAGATGTCAACATTGATGCAAATGAAGGTTTTATAAAGAATGGACAATCTCCTGTTCTTACCGTAATGTCAGCAGGCCATGCTTTGCATGTTTTCATTAATGGTCAACTTTCAGGTACTGTGTACGGGGGACTGGACTCTCATAAGTTAACATTTAGTGACAGTGTTAAGCTGAGGGTTGGCAATAACAAGATTTCTTTGCTAAGTATTACCGTGGGTCTCCCGAATGTTGGGCCATACTTTGAGACATGGAATGCTGGGGTTTTAGGCCCAGTCACACTTAAGGGTCTAAATGAGGGGACTAGAGACTTGTCTAAACAGAAATGGTCTTACAAGATTGGTCTCAAGGGTGAAGCCTTAAACCTTAACACTGTAAGTGGTAGTTCCTCCGTTGAATGGGTACAAGGATCATTATTGACTAAGAAGCAACCTTTGACATGGTACAAGACAACTTTTAGCACACCAGCAGGCAACGATCCGTTAGCTCTAGACATGATTAGCATGGGAAAGGGTCAGGTATGGATAAACGGTCGAAGCATTGGACGCCATTGGCCTGGATATATAGCACGTGGTAGTTGTGGGGATTGTTATTATGCTGGGACTTACACTGATAAAAAATGCCGGACAAATTGTGGAGAACCATCCCAGAGATGGTACCATATTCCTCGGTCGTGGCTGAACCCAAGCGGCAACTATCTGGTTGTGTTTGAAGAATGGGGAGGTGATCCTACTGGAATTTCTTTGGTGAAAAGAACAACAGCAAGTGTGTGCGCTGATATATTTGAAGGGCAACCAACTCTGAAGAACAGGCAGATGCTAGACTCTGGCAAAGTTATTAGACCCAAGGCTCACTTGTGGTGTCCACCTGGGCAAAAGATCTCTAAGATTAAATTTGCAAGTTATGGATTGCCACATGGAACTTGTGGAAACTTCAGAGAAGGAAGTTGTCATGCTCACAAATCATATGATGCTCCTCAAAAGAACTGCATTGGCAAGCAATCTTGCTTGGTGACTGTAGCTCCTGAAGTTTTTGGGGGAGACCCGTGTCCGGGAATTGCAAAGAAGTTCTCACTTGAGGCACTATGCAGCTAG 2520 0.4401 MGSRVLMENLPRGNFYTLLLVLWVCAVTASVTYDHKAIVVNGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEDRYDLVKFIKLVQQAGLSVHLRIGPYICAEWNFGGFPVWLKYVPDIAFRTDNEPFKAAMQKFTEKIVSMMKAEKLFQTQGGPIIMSQIENEYGTVEWEIGAPGKAYTKWFSQMAVGLDTGVPWIMCKQQDTPDPIIDTCNGYYCENFTPNKKYKPKMWTENWTGWYTEFGGAVPRRPAEDMAFSVARFVQNGGSFVNYYMYHGGTNFDRTSSGLFIATSYDYDGPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVTWPGNNLEVHVFKTSGACAAFLANYDTKSSAAVKFGNGQYDLPPWSISILPDCKTAVFNTARLGAQSSLMKMTAVNSAFDWQSYNEEAASSNEDDSLTAYALWEQINVTRDSTDYLWYMTDVNIDANEGFIKNGQSPVLTVMSAGHALHVFINGQLSGTVYGGLDSHKLTFSDSVKLRVGNNKISLLSITVGLPNVGPYFETWNAGVLGPVTLKGLNEGTRDLSKQKWSYKIGLKGEALNLNTVSGSSSVEWVQGSLLTKKQPLTWYKTTFSTPAGNDPLALDMISMGKGQVWINGRSIGRHWPGYIARGSCGDCYYAGTYTDKKCRTNCGEPSQRWYHIPRSWLNPSGNYLVVFEEWGGDPTGISLVKRTTASVCADIFEGQPTLKNRQMLDSGKVIRPKAHLWCPPGQKISKIKFASYGLPHGTCGNFREGSCHAHKSYDAPQKNCIGKQSCLVTVAPEVFGGDPCPGIAKKFSLEALCS 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00839 839 PRINTS Glycosyl hydrolase family 35 signature 41 58 IPR001944 GO:0004553|GO:0005975
Gma13g00839 839 PRINTS Glycosyl hydrolase family 35 signature 62 80 IPR001944 GO:0004553|GO:0005975
Gma13g00839 839 PRINTS Glycosyl hydrolase family 35 signature 117 136 IPR001944 GO:0004553|GO:0005975
Gma13g00839 839 PRINTS Glycosyl hydrolase family 35 signature 174 189 IPR001944 GO:0004553|GO:0005975
Gma13g00839 839 PRINTS Glycosyl hydrolase family 35 signature 253 268 IPR001944 GO:0004553|GO:0005975
Gma13g00839 839 PRINTS Glycosyl hydrolase family 35 signature 290 305 IPR001944 GO:0004553|GO:0005975
Gma13g00839 839 PRINTS Glycosyl hydrolase family 35 signature 310 326 IPR001944 GO:0004553|GO:0005975
Gma13g00839 839 PRINTS Glycosyl hydrolase family 35 signature 619 633 IPR001944 GO:0004553|GO:0005975
Gma13g00839 839 PRINTS Glycosyl hydrolase family 35 signature 646 662 IPR001944 GO:0004553|GO:0005975
Gma13g00839 839 Gene3D - 591 733 - -
Gma13g00839 839 ProSiteProfiles SUEL-type lectin domain profile. 753 839 IPR000922 GO:0030246
Gma13g00839 839 SUPERFAMILY Galactose-binding domain-like 404 574 IPR008979 -
Gma13g00839 839 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 176 188 IPR019801 GO:0004553|GO:0005975
Gma13g00839 839 Pfam Galactose binding lectin domain 761 838 IPR000922 GO:0030246
Gma13g00839 839 Pfam Glycosyl hydrolases family 35 38 342 IPR031330 -
Gma13g00839 839 SUPERFAMILY Galactose-binding domain-like 584 743 IPR008979 -
Gma13g00839 839 PANTHER BETA-GALACTOSIDASE RELATED 17 728 IPR001944 GO:0004553|GO:0005975
Gma13g00839 839 SUPERFAMILY (Trans)glycosidases 30 347 IPR017853 -
Gma13g00839 839 Gene3D - 753 839 IPR043159 -
Gma13g00839 839 Gene3D - 437 584 - -
Gma13g00839 839 PANTHER BETA-GALACTOSIDASE 17 728 - -
Gma13g00839 839 Gene3D Glycosidases 24 346 - -
Gma13g00839 839 Pfam Beta-sandwich domain in beta galactosidase 350 419 IPR041392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00839 Gma-Chr13 22666274 22671833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00839 18 839 Glycoside Hydrolase AT3G13750 70.894 0.0 1244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00839 - - gmx:106795462 1771.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00839 13 22666274 22671833 Gma13g00839 13 22666274 22671833 ECH
Gma17g00520 17 4271325 4276699 Gma13g00839 13 22666274 22671833 GST
Gma13g00839 13 22666274 22671833 Gma15g01582 15 15382350 15387544 PCT
Gma13g00839 13 22666274 22671833 Gma09g00571 09 6136398 6142843 PCT
Gma15g01582 15 15382350 15387544 Gma13g00839 13 22666274 22671833 PCT
Gma09g00571 09 6136398 6142843 Gma13g00839 13 22666274 22671833 PCT