Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01902 ATGCCTCCTATCCAAGGGTTGCCGCTCCTCATTGCCGAGAGTTATCGCTTCGCCATGAATCACCCCCATATCTCCGTGTTTGGCATGAGTAGCTACGACATCAATCCCTTTGCCGAAGACGAGGTTAATCCTTTCGCTGATGGAACTGCTAAAGGAAAAGCATCGGGGCAATCAAATCATGGTGGTGGTGCAGCATCAAAGCTTTCACCCCTGTCTCCTGAGCCTTATGATTGTGCAGCAACTGTTGACATTCCTCTTGATTCCTCAAAGGACCTCAAAGCCAAGGAGAAGGAGCTCCAAGCTAGAGAGGCTGAATTGAAAAGAAGGGAACAGGAGCTAAAACGAAGGGAAGATGCTATAGCACGAGCTGGAATTGTTATAGAGGAGAAAAATTGGCCACCTTTTTGCCCCATCATTCATCACGACATTGCAAATGAAATACCTATACATCTTCAATCAATCCAGTATGTAGCATTTACAACATGGTTAGGTTTGGTTGGATGTCTTTTATGGAATATTGCAGCAGTTACTGTAGCTTGGATCAAAGGAGAAGGTCTTTCAATCTGGTTCCTATCTATCATATACTTTATTTCCGGTGTTCCAGCATCCTATGTGATGTGGTATCGCCCTCTTTATCGTGCGACAAGGTATGCTCTTATCCCTTTTCTCATTCTTTCCAACCAGGTGCACATTCTCTTTTGTGTTTTTGCTACAATTGCTCCTCCAATTGTCTTCAAAGGGAAATCTCTCACAGGTATTCTGCCTGCGTTTGAGGTATTGGACTACAATGGATTGGTTGGGATACTCTACTTTATTGGGTTTGGTTTTTTCTGCATTGAATCACTGCTGAGCATTTGGGTTATTCAGCAAGTATACATGTACTTCCGGGGCAGTGGAAAGGCTGCAGCGATGAGGCGTGAAGCTGCGCAAGGGGCCATGAGGGCAGCTCTATGA 954 0.4497 MPPIQGLPLLIAESYRFAMNHPHISVFGMSSYDINPFAEDEVNPFADGTAKGKASGQSNHGGGAASKLSPLSPEPYDCAATVDIPLDSSKDLKAKEKELQAREAELKRREQELKRREDAIARAGIVIEEKNWPPFCPIIHHDIANEIPIHLQSIQYVAFTTWLGLVGCLLWNIAAVTVAWIKGEGLSIWFLSIIYFISGVPASYVMWYRPLYRATRYALIPFLILSNQVHILFCVFATIAPPIVFKGKSLTGILPAFEVLDYNGLVGILYFIGFGFFCIESLLSIWVIQQVYMYFRGSGKAAAMRREAAQGAMRAAL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01902 317 Pfam SCAMP family 129 297 IPR007273 GO:0015031|GO:0016021
Gma12g01902 317 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP 29 317 IPR007273 GO:0015031|GO:0016021
Gma12g01902 317 MobiDBLite consensus disorder prediction 45 69 - -
Gma12g01902 317 Coils Coil 89 119 - -
Gma12g01902 317 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN 29 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01902 Gma-Chr12 39652337 39658235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01902 32 317 Miscellaneous Gene Families AT1G11180 62.500 2.72e-122 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01902 K19995 - gmx:100820206 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01902 12 39652337 39658235 Gma12g01902 12 39652337 39658235 ECH
Gma13g02657 13 41307103 41312163 Gma12g01902 12 39652337 39658235 GST
Gma12g01902 12 39652337 39658235 Gma12g00966 12 10087224 10094174 PCT
Gma12g01902 12 39652337 39658235 Gma06g02654 06 50065946 50073015 PCT
Gma12g00966 12 10087224 10094174 Gma12g01902 12 39652337 39658235 PCT
Gma06g02654 06 50065946 50073015 Gma12g01902 12 39652337 39658235 PCT