Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01716 ATGCAGACTCTTTCGCCGCCTACTTCCAACGCTCTCAATTTGAAGCACGTTCTTCGCCCGCGTCGAGTCGCGCCTAGCCGAATCTTTGTCAAATGCGCCTTCGCGTCTGAGCCCGCCAGCTACGGGGTCGGCTCGAGCCGAGCCGATTGGCAGAGCTCCTGCGCCATCTTAGCCAGCAAGGTCGTTTCTCAAGAACAAACCTCCTCCGCTGACCAGAACGGCGGCACCGCCGACCATATCGCCGCCGTCAACGGCCACAAAGCCGCCGTCAGCGACCTCCAACTCGTTCCAATTGGAAATCTAGCACAGGCCAACAACAAGCCGCTCCCGCCGAAGCCGCTCACAATCTCCGACCTCTCGCCGGCGCCGATGCACGGCTCCAAGCTCCGCGTCGCGTACCAAGGCGTTCCCGGCGCGTACTCCGAGGCAGCCGCCGGCAAGGCCTATCCGAACTGCGAGGCCATTCCCTGCGACCAGTTCGAGGTTGCGTTCCAGGCGGTGGAGCTCTGGATCGCCGATCGAGCGGTTATGCCGGTCGAAAACTCCCTCGGCGGCTCGATCCACCGGAACTACGACCTCCTCCTCCGCCACCGCCTCCACATCGTCGGCGAGGTCCAGCTCCCGGTCCACCACTGCCTCCTCGCGCTCCCCGGCGTCCGAAAGGAGTTCCTCACGCGAGTGATTTCGCATCCGCAGGCACTCGCGCAGTGCGAGCACACTCTCACCAAACTCGGCCTGAACGTGGCGCGCGAGGCCGTGGACGACACCGCCGGCGCCGCCGAGTTCGTCGCCACGAATAACCTCCGCGATACCGCCGCCATCGCGAGCGCACGAGCGGCGGAGCTCTACGGCCTGAACGTGATGGCGGACGGAATCCAAGACGATCCGAGCAACGTCACGCGGTTCGTGATGCTGGCGAGAGAGCCTATCATTCCGCGCACGGACCGTCCTTTCAAGACGAGCATTGTTTTCGCACACGACAAGGGAACTTCGGTGCTCTTCAAAGTGCTTTCCGCGTTCGCGTTCCGTAACATCAGTCTAACGAAGATCGAGTCACGGCCGCATCGGAACCGTCCGATTAGGCTGGTGGATGACGCGAACGTGGGAACAGCGAAGCACTTCGAGTACTTGTTCTACGTTGATTTTGAGGCCTCCATGGCTGAGGTTAGGGCACAGAACGCGTTGGCGGAGGTGCAGGAATTCACGTCTTTCTTGCGAGTGTTGGGGAGTTACCCTATGGACATGACACCCTGGACACCTTCCTCCCGGGGAGATTAG 1278 0.6189 MQTLSPPTSNALNLKHVLRPRRVAPSRIFVKCAFASEPASYGVGSSRADWQSSCAILASKVVSQEQTSSADQNGGTADHIAAVNGHKAAVSDLQLVPIGNLAQANNKPLPPKPLTISDLSPAPMHGSKLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVMPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEFLTRVISHPQALAQCEHTLTKLGLNVAREAVDDTAGAAEFVATNNLRDTAAIASARAAELYGLNVMADGIQDDPSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYLFYVDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWTPSSRGD 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01716 425 CDD ACT_CM-PDT 319 412 - -
Gma12g01716 425 CDD PBP2_Ct-PDT_like 128 309 - -
Gma12g01716 425 SUPERFAMILY Periplasmic binding protein-like II 130 313 - -
Gma12g01716 425 Gene3D - 125 213 - -
Gma12g01716 425 ProSiteProfiles ACT domain profile. 321 412 IPR002912 -
Gma12g01716 425 ProSiteProfiles Prephenate dehydratase domain profile. 130 307 IPR001086 GO:0004664|GO:0009094
Gma12g01716 425 PANTHER AROGENATE DEHYDRATASE 33 422 - -
Gma12g01716 425 ProSitePatterns Prephenate dehydratase signature 2. 347 354 IPR018528 GO:0004664|GO:0009094
Gma12g01716 425 Gene3D - 314 415 - -
Gma12g01716 425 SUPERFAMILY ACT-like 302 414 IPR045865 -
Gma12g01716 425 Pfam Prephenate dehydratase 131 309 IPR001086 GO:0004664|GO:0009094
Gma12g01716 425 ProSitePatterns Prephenate dehydratase signature 1. 283 305 IPR018528 GO:0004664|GO:0009094
Gma12g01716 425 Gene3D - 214 295 - -
Gma12g01716 425 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 33 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01716 Gma-Chr12 37697997 37700039 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01716 K05359 - gmx:100797636 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01716 12 37697997 37700039 Gma12g01716 12 37697997 37700039 ECH
Gma13g02835 13 42870504 42872505 Gma12g01716 12 37697997 37700039 GST
Gma12g01716 12 37697997 37700039 Gma12g00760 12 6996408 6997694 PCT
Gma12g01716 12 37697997 37700039 Gma11g01545 11 16494553 16496275 PCT
Gma12g00760 12 6996408 6997694 Gma12g01716 12 37697997 37700039 PCT
Gma11g01545 11 16494553 16496275 Gma12g01716 12 37697997 37700039 PCT