Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00888 ATGGATTCTACATCAGTTCACAAGGACATTGATGAACCTTTGCTGGTCTCAAACGAACCTTCACCCGAGCCACCTTCTTGTACTCAATCATTCAGCTCAAAGCATGGATCAGATGGTGAACTTGAGCGAATACTCTCAAACACTAGCGTCCCTTTCGCGAAGCGTCTTGGACCGGCAACATGGGTGGAGTTGAAGCTCTTGTTTCACCTTGCTGCTCCTGCTGTTATCGTCTACCTTATCAACTATGTCATGTCCATGTCCACACAAATCTTTTCAGGCCACCTCGGTAACCTTGAACTTGCTGCTGCTTCTCTTGGAAACACCGGCATCCAAGTCTTCGCTTATGGCCTCATGTTAGGAATGGGAAGTGCTGTTGAGACACTATGTGGACAAGCATACGGTGCCAAAAAATTCGACATGTTAGGCATATACCTGCAAAGATCAACGGTGCTTCTGACGCTAGCAGGCATTATTCTAACCATCATATACATCTTCTCCGAACCCATTCTAATCTTCCTAGGAGAATCCCCAAGAATCGCATCCGCAGCAGCACTTTTCGTCTACGGCCTAATCCCTCAAATCTTCGCTTACGCTGTAAACTTCCCCATTCAAAAATTCCTCCAAGCCCAGAGCATAGTGGCTCCAAGCGCATACATTTCAACAGCAACGTTGTTGGTCCATCTTGTGTTGAGTTATTTTGTTGTGTACGAGGTGGGGCTTGGTCTGTTGGGTGCGTCGCTGGTGTTGAGTGTTTCGTGGTGGATCATTGTGATTGCACAGTTTGTGTACATTGTCAAGAGTGAAAAGTGTAAGCACACTTGGAGAGGGTTCAGTTTTCAAGCGTTTTCGGGCTTGCCAGAGTTTTTTAAGCTGTCTGCTGCTTCGGCGGTGATGCTCTGCCTAGAGACCTGGTACTTCCAAATTTTGGTTCTGCTTGCAGGGTTGCTTCCTCACCCTGAGTTGGCTCTGGATTCTCTATCTATTTGTACCACAGTGTCTGGATGGGTTTTTATGATCTCAGTTGGATTTAACGCAGCTGCAAGTGTGAGAGTGAGCAATGAACTAGGGGCAAGAAATCCAAAATCAGCGTCATTTTCGGTTGTGGTGGTGACATTGATTTCTTTCATAATATCAGTTATTGTAGCACTTGTGGTGCTGGCAATAAGAGATGTCATTAGCTATGCCTTCACAGACGGTGAAGAGGTGGCTGCTGCTGTCTCAGATCTTTGTCCTCTACTTGCTCTTTCTATTATTCTCAACGGCATTCAACCTGTCTTATCTGGGGTGGCTGTTGGATGTGGATGGCAAACTTTTGTTGCGTATGTGAACGTTGGTTGTTATTATGGAATTGGCATACCATTGGGTTCGGTTCTCGGTTTCTATTTCAAACTCAGTGCTAAGGGAATATGGTTGGGAATGCTAGGTGGCACGGTTTTGCAAACAATTATTTTAGTGTGGGTCACATTTGGAACGGATTGGAATAAAGAGGTTGAAGAAGCAGCAAAGAGGTTGAACAAGTGGGAGGACAAAACGGAGCCACTTGTCAATAACTGA 1554 0.4556 MDSTSVHKDIDEPLLVSNEPSPEPPSCTQSFSSKHGSDGELERILSNTSVPFAKRLGPATWVELKLLFHLAAPAVIVYLINYVMSMSTQIFSGHLGNLELAAASLGNTGIQVFAYGLMLGMGSAVETLCGQAYGAKKFDMLGIYLQRSTVLLTLAGIILTIIYIFSEPILIFLGESPRIASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVAPSAYISTATLLVHLVLSYFVVYEVGLGLLGASLVLSVSWWIIVIAQFVYIVKSEKCKHTWRGFSFQAFSGLPEFFKLSAASAVMLCLETWYFQILVLLAGLLPHPELALDSLSICTTVSGWVFMISVGFNAAASVRVSNELGARNPKSASFSVVVVTLISFIISVIVALVVLAIRDVISYAFTDGEEVAAAVSDLCPLLALSIILNGIQPVLSGVAVGCGWQTFVAYVNVGCYYGIGIPLGSVLGFYFKLSAKGIWLGMLGGTVLQTIILVWVTFGTDWNKEVEEAAKRLNKWEDKTEPLVNN 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00888 517 MobiDBLite consensus disorder prediction 21 35 - -
Gma12g00888 517 CDD MATE_eukaryotic 63 499 IPR045069 GO:0042910|GO:1990961
Gma12g00888 517 Coils Coil 490 510 - -
Gma12g00888 517 MobiDBLite consensus disorder prediction 1 38 - -
Gma12g00888 517 Pfam MatE 73 232 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Gma12g00888 517 Pfam MatE 295 455 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Gma12g00888 517 PANTHER PROTEIN DETOXIFICATION 18 504 - -
Gma12g00888 517 PANTHER MULTIDRUG RESISTANCE PROTEIN 18 504 - -
Gma12g00888 517 TIGRFAM matE: MATE efflux family protein 73 470 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00888 Gma-Chr12 8754735 8760893 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00888 K03327 - gmx:100801718 971.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00888 12 8754735 8760893 Gma12g00888 12 8754735 8760893 ECH
Gma12g00888 12 8754735 8760893 Gma06g02712 06 50865310 50872582 GST
Gma12g01834 12 38983538 38987886 Gma12g00888 12 8754735 8760893 PCT
Gma12g00888 12 8754735 8760893 Gma12g01834 12 38983538 38987886 PCT