Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00526 ATGGCTGAGCCAAACATTGCTAGCAGATGGTCTTTACAGGGGATGACAGCTCTCGTCACCGGTGGATCCAAAGGAATTGGATATGCTATCGTGGAGGAGTTGGCACAGCTTGGAGCCACTGTGCACACTTGCGCTCGGAACGAAGCTGAACTCAATGAATCCTTAAATGAATGGAACACAAAAGGATACAGAGTAACTGGTTCCGTCTGTGACGTGGCGTCTCGTGCAGAAAGACAAGACCTCATCGCTAGACTCTCCTCTGAGTTTAATGGCAAACTCAATATACTTGTAAACAACGTGGGAACAAACATATGGAAAGACCTCTTGGAATACACAGAGGAAGACTTTTTATTTCTGGTGAATACGAATTTGCAATCTGCTTTCCACCTATGCCAGCTTGCACATCCTCTCCTAAAAGCCTCCGAAGCTGCAAGCATCGTTTTCATATCCTCCATTGGAGGTGTGGTATCAATAAATTTAGGATCCGTTGTATATAGTGCAACAAAAGGAGCAATGAACCAAATGACAAAACATTTGGCATGTGAATGGGCCAAAGACAATATAAGGACTAATTGCGTTGCACCAGGGCCAATTAGAACCCCTCTTGGTGACAAGCACTTTAAAGAGGAAAAACTTAATAATAGTCTGATTGCGCGAACCCCTCTTGGACGGATTGGAGAGGCAGAGGAGGTTTCTTCGTTGGTGGCATTCCTCTGCTTACCTGCAGCATCTTACATAACAGGACAAACCATTTGTGTTGATGGCGGCTTCACCGTGAACGGTCTCTACATAAGCTAG 798 0.4511 MAEPNIASRWSLQGMTALVTGGSKGIGYAIVEELAQLGATVHTCARNEAELNESLNEWNTKGYRVTGSVCDVASRAERQDLIARLSSEFNGKLNILVNNVGTNIWKDLLEYTEEDFLFLVNTNLQSAFHLCQLAHPLLKASEAASIVFISSIGGVVSINLGSVVYSATKGAMNQMTKHLACEWAKDNIRTNCVAPGPIRTPLGDKHFKEEKLNNSLIARTPLGRIGEAEEVSSLVAFLCLPAASYITGQTICVDGGFTVNGLYIS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00526 265 Gene3D - 2 263 - -
Gma12g00526 265 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 152 180 IPR020904 GO:0016491
Gma12g00526 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 IPR002347 -
Gma12g00526 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 IPR002347 -
Gma12g00526 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 IPR002347 -
Gma12g00526 265 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 260 IPR036291 -
Gma12g00526 265 PANTHER TROPINONE REDUCTASE 7 263 IPR045000 GO:0016491
Gma12g00526 265 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 7 263 - -
Gma12g00526 265 Pfam Enoyl-(Acyl carrier protein) reductase 23 258 - -
Gma12g00526 265 PRINTS Glucose/ribitol dehydrogenase family signature 186 203 IPR002347 -
Gma12g00526 265 PRINTS Glucose/ribitol dehydrogenase family signature 16 33 IPR002347 -
Gma12g00526 265 PRINTS Glucose/ribitol dehydrogenase family signature 91 102 IPR002347 -
Gma12g00526 265 PRINTS Glucose/ribitol dehydrogenase family signature 138 154 IPR002347 -
Gma12g00526 265 PRINTS Glucose/ribitol dehydrogenase family signature 165 184 IPR002347 -
Gma12g00526 265 PRINTS Glucose/ribitol dehydrogenase family signature 221 241 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00526 Gma-Chr12 4365165 4372366 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00526 8 262 Miscellaneous Gene Families AT2G29150 65.098 1.68e-119 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00526 K08081 - gmx:100787037 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00526 12 4365165 4372366 Gma12g00526 12 4365165 4372366 ECH
Gma18g01712 18 47900752 47903450 Gma12g00526 12 4365165 4372366 ECH
Gma12g00526 12 4365165 4372366 Gma11g01227 11 10457667 10460700 GST