Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02452 ATGAAGTGTTTCTCCTTATCCTCAATTTCTCTTTTCATTCTCCTCTTTCTCTGTTCCGAGAGTGTGTCCTCTCAAAATGTATCCGAGAGTGAGCAGCAGCAAGCTAGCATTCCTCCAAGAGGTTGGAACTCCTATGATTCCTTTTGCTGGACAATTTCTGAAGAAGAATTCTTACAGAGTGCTGAAATAGTTTCTCAACGTCTCCATGATCATGGATACGAGTATGTTGTAGTGGATTACCTCTGGTATAGAAGGAAAGTAGAGGGCGCTTATCATGATTCTCTTGGATTTGATGTGATTGATGAATGGGGGAGGATGGTTCCTGACCCAGGAAGGTGGCCTTCTTCTGAAAATGGGAAAGGATTCACTGAAGTAGCTAATCAAGTACATAGCATGGGTTTAAAATTTGGGATTCATGTCATGAGAGGGATAAGCACACAAGCTGTCAATGCAAACACCCCTATCCTTGATACAACAATGGGAGGTGCTTATCAAGAATCTGGTCGAGTGTGGTATGCAAAAGACATAGCAATCCCAGAAAGGGCTTGTGCatggatgtctcatggtttcatgagtgtaaatacaaagttgggagctgggaaagcttttttgagatccctttatgagcagtatgctgcatggggtgttgattttgtgaaacatgactgcgtattcggggatgactttgatttaaatgaaataagctatgtgtctgagGTTCTCAAGGAGTTTGATCGCCCCATTGTATATTCTTTGTCTCCCGGAACCAGTGCGACACCAGCAATGGCCAAGGATGTCAGTGGACTGGTCAATATGTATCGTATAACAGGAGATGACTGGGATACATGGGGGGATGTCAAAGCTCATTTTGATATAACAAGGGATTTTTCGAATGCTAATATGATAGGAGCAAAAGGTTTAATGGGGAACTCCTGGCCTGATCTGGACATGCTACCATTTGGATGGCTAACTGATCCTGGTTCAAATGAAGGTCCACATAGGTATAGTTACCTCAATCTAGAAGAGAAGAAGACACAGATGACTCTGTGGTCGATGGCAAAGTCTCCCCTTATGTATGGAGGGGATGTTCGGAAGATTGATCCTAGCACATATGATGTTATAACAAATCCTACCCTTTTGGAGATTAATTCTTTTAGCTCAAATAACATGGAGTTTCCTTATATCACAAGCGTGAATAGTGAAGATCAGGATCTTGGTAGGCCAATGAGAAGAAGCAGCATGGAAATAAAAACATCCTACACTCATTCATTGGGCCTCACAAGCTGCACTGAGTCAAAGGCAAGCGGTTGGGCTAGTGAAAGTCTTAACCAATACCTTGAAAGAATATGCTGGAAAAGGAGTTTAGGAAACAAGCATCTTTCCCCCTTCTGTGTGCACAAGAGGGAACTTTACTTCCCATTTGATGAAGCGAGTATGTATCAAGAGTATCATCAAAGGAAACATCATTTAGTTGCAACTAACAGAATAAAATTTTGCTTGGATGCTTCTCCAAAACGCAAGCTTACTTCTAAAGAGTTCAAGAGAGGGACATTTTCTCCCTGCAGTTGGGATTCAAATCAGATGTGGGAGTTGAACCCTAATGGGACCCTGGTGAATAGTTATTCTGGCTTGTGTGCAACAGTAGAATCTAGTGAAGATACTATTAATTCTGGTGGCTTGCACTCTTGGATTGCTACAGGAAGAAAAGGAGAAGTCTACGTTGCTTTCTTCAATCTAAGTGAACAGAAGAGGGTAATATCTGCAAAAACATCAGACCTGGCTAAGGTTCTTCCTGGCAGAGACTTCAGTTCTTGTCAGGGCAGTGAAGTGTGGAGTGGAGATGCTATAGAAATAACTCGGGGAACGTTATCAACGGCAGTGGAAGTGCATGGAAGTGCACTAATTGTTCTCAATTGCAACGAGTCCCCCCTCCTTTCCCCAAAAATAGAAAGAAAGAAAGAAAATAAGTAA 1971 0.3876 MKCFSLSSISLFILLFLCSESVSSQNVSESEQQQASIPPRGWNSYDSFCWTISEEEFLQSAEIVSQRLHDHGYEYVVVDYLWYRRKVEGAYHDSLGFDVIDEWGRMVPDPGRWPSSENGKGFTEVANQVHSMGLKFGIHVMRGISTQAVNANTPILDTTMGGAYQESGRVWYAKDIAIPERACAWMSHGFMSVNTKLGAGKAFLRSLYEQYAAWGVDFVKHDCVFGDDFDLNEISYVSEVLKEFDRPIVYSLSPGTSATPAMAKDVSGLVNMYRITGDDWDTWGDVKAHFDITRDFSNANMIGAKGLMGNSWPDLDMLPFGWLTDPGSNEGPHRYSYLNLEEKKTQMTLWSMAKSPLMYGGDVRKIDPSTYDVITNPTLLEINSFSSNNMEFPYITSVNSEDQDLGRPMRRSSMEIKTSYTHSLGLTSCTESKASGWASESLNQYLERICWKRSLGNKHLSPFCVHKRELYFPFDEASMYQEYHQRKHHLVATNRIKFCLDASPKRKLTSKEFKRGTFSPCSWDSNQMWELNPNGTLVNSYSGLCATVESSEDTINSGGLHSWIATGRKGEVYVAFFNLSEQKRVISAKTSDLAKVLPGRDFSSCQGSEVWSGDAIEITRGTLSTAVEVHGSALIVLNCNESPLLSPKIERKKENK 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02452 656 CDD RICIN 487 567 IPR000772 -
Gma11g02452 656 CDD GH27 38 383 IPR002241 GO:0004553|GO:0005975
Gma11g02452 656 Pfam Alpha galactosidase C-terminal beta sandwich domain 558 637 IPR041233 -
Gma11g02452 656 Gene3D - 552 640 IPR013780 -
Gma11g02452 656 Gene3D Aldolase class I 16 385 IPR013785 -
Gma11g02452 656 SUPERFAMILY Glycosyl hydrolase domain 555 637 - -
Gma11g02452 656 PRINTS Glycosyl hydrolase family 27 signature 32 51 IPR002241 GO:0004553|GO:0005975
Gma11g02452 656 PRINTS Glycosyl hydrolase family 27 signature 126 147 IPR002241 GO:0004553|GO:0005975
Gma11g02452 656 PRINTS Glycosyl hydrolase family 27 signature 341 362 IPR002241 GO:0004553|GO:0005975
Gma11g02452 656 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 3 637 IPR002241 GO:0004553|GO:0005975
Gma11g02452 656 PANTHER ALPHA-GALACTOSIDASE 3 637 - -
Gma11g02452 656 SUPERFAMILY (Trans)glycosidases 35 383 IPR017853 -
Gma11g02452 656 Pfam Alpha galactosidase A 51 146 IPR002241 GO:0004553|GO:0005975
Gma11g02452 656 Pfam Alpha galactosidase A 209 383 IPR002241 GO:0004553|GO:0005975
Gma11g02452 656 SUPERFAMILY Ricin B-like lectins 497 563 IPR035992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02452 Gma-Chr11 39834093 39839331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02452 2 469 Glycoside Hydrolase AT3G26380 68.870 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02452 - - gmx:100777954 1333.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00122 18 967501 970414 Gma11g02452 11 39834093 39839331 GST
Gma05g01726 05 38900989 38906498 Gma11g02452 11 39834093 39839331 PCT
Gma08g01212 08 10296289 10301779 Gma11g02452 11 39834093 39839331 PCT